Open chilampoon opened 1 year ago
Also it'd be better to make the chromosome id be consistent between vcf and bam.., now it's like 1
in vcf but it's actually chr1
in bam
Oh nevermind if I set --chrom chr1 then in vcf it'll also be chr1, sorry I was just being dumb
Hi there, I ran cellsnp on my mouse data but ran into this error:
I just noticed that the default param for
--chrom
is 1-22 however it's only 1-19 and M,X,Y in mouse, so if the default chromosomes could be automatically extracted from the input it'd be very much appreciated, thank you very much!