single-cell-genetics / cellsnp-lite

Efficient genotyping bi-allelic SNPs on single cells
https://cellsnp-lite.readthedocs.io
Apache License 2.0
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Add a proper VCF header to "cellSNP.base.vcf.gz". #99

Closed ghuls closed 1 year ago

ghuls commented 1 year ago

Add a proper VCF header to "cellSNP.base.vcf.gz" so other tools can work with it.

Before this patch Picard couldn't work with the "cellSNP.base.vcf.gz" file at all as it requires complete VCF header by default and BCFtools would emit warnings about INOF fields not defined in the header and assuming "Type=String" instead of "Number=1".