Open hsymoon opened 2 months ago
Hi, thanks for sending the issue. Did you use cellsnp(-lite) to get the cell VCF $cell_sampe.vcf.gz
? If not, you may simply try that.
Currently, the issue is likely due to that the FORMAT column is different for different variants.
Yuanhua
I have a vcf.gz(single cells snp information) and a donor snp.vcg.gz.I want to use viero mode2,Here is my command: vireo -c $cell_sampe.vcf.gz -d $donor.sorted.vcf.gz" -o ./ -N 4 --randSeed 2 --genoTag PL
But viero says: [vireo] Loading cell VCF file ... Error: require the same format for all variants.
I check my cell.vcf.gz and donor.vcf.gz , both have the same header .Can you tell me what is problem?Thanks very much.
Blow are my cell information:![image](https://github.com/single-cell-genetics/vireo/assets/105500176/153a2e9d-67e7-4aea-bb1b-1b9e201a8b33)
Blow are my donor information:![image](https://github.com/single-cell-genetics/vireo/assets/105500176/c1bacecc-15e1-4589-acd4-f77fc5dd2145)