single-cell-genetics / vireo

Demultiplexing pooled scRNA-seq data with or without genotype reference
https://vireoSNP.readthedocs.io
Apache License 2.0
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Extracting cell barcodes #103

Closed emmascne closed 4 months ago

emmascne commented 4 months ago

Hi,

I am trying to study macrophage lineages using mitochondrial variant. I am able to obtain the heatmap with the number of clones for my sample. I was wondering how can I extract the cell barcodes of the cells from each clones so I can match them with the clusters that I did on R using Seurat ? I would like to make one heatmap with the clones, and to which cell cluster they belong. Thank you.