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single-cell-genetics / vireo

Demultiplexing pooled scRNA-seq data with or without genotype reference
https://vireoSNP.readthedocs.io
Apache License 2.0
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snATAC implimentation #27

Closed kvshams closed 3 years ago

kvshams commented 3 years ago

Is there any plan to implement this pipeline to snATAC data?

huangyh09 commented 3 years ago

I think it is already applicable. Vireo is a general model for clustering cells by allelic expression or detection. So the pipeline designed for scRNA-seq should be OK to use for snATAC.

Yuanhua