I have been running vireoSNP v0.1.8 with a variety of different commands to compare the results. I have genotype information for some but not all of my multiplexed samples. When I run:
vireo -c $CELL_DATA -d $DONOR_GT_FILE -o $OUT -N $n_donor --forceLearnGT
I get the following error:
Warning: no outDir provided, we use $cellFilePath/vireo.
Traceback (most recent call last):
File "/share/ClusterShare/software/contrib/sccg/anaconda3/bin/vireo", line 11, in <module>
load_entry_point('vireoSNP==0.1.8', 'console_scripts', 'vireo')()
File "/share/ClusterShare/software/contrib/sccg/anaconda3/lib/python3.7/site-packages/vireoSNP-0.1.8-py3.7.egg/vireoSNP/vireo.py", line 87, in main
AttributeError: 'Values' object has no attribute 'cell_file'
Even though I have provided an outDir in the command it seems to think that I have not.
I have run:
vireo -c $CELL_DATA -d $DONOR_GT_FILE -o $OUT -N $n_donor
without this error (but with a different error that was posted separately)
and I also ran:
vireo -c $CELL_DATA -o $OUT -N $n_donor
that finished without any errors.
Hello,
I have been running vireoSNP v0.1.8 with a variety of different commands to compare the results. I have genotype information for some but not all of my multiplexed samples. When I run:
vireo -c $CELL_DATA -d $DONOR_GT_FILE -o $OUT -N $n_donor --forceLearnGTI get the following error:
Even though I have provided an outDir in the command it seems to think that I have not.
I have run:
vireo -c $CELL_DATA -d $DONOR_GT_FILE -o $OUT -N $n_donorwithout this error (but with a different error that was posted separately)and I also ran:
vireo -c $CELL_DATA -o $OUT -N $n_donorthat finished without any errors.Any ideas on how I might fix this?
Cheers, Drew