Adding reports - Githubissues

vsoch commented 4 years ago

This PR includes work from #8 with final tweaks to generate a working container! The changes I added include:

adding python3-dev to the Dockerfile to make the needed python headers available
not requiring a type (directory) for the --report argument as None will issue an error, but checking later
additional documentation about usage in the README
addition of a --no-print parameter, which is separate from --report (e.g., a user might want to generate a report and print to stdout, generating a report does not guarantee the user does not want to print.
version bump and update to changelog

This will need to be squashed because there is a huge number of commits here, and the changes are relatively small. After this I'll also do another PR to add black and testing for it.

vsoch commented 4 years ago

Quick question - you commit with two aliases - are these two different people?

Co-authored-by: Vlad Doster mvdoster@gmail.com Co-authored-by: Alex Cullen Alex_Cullen@hms.harvard.edu

vladdoster commented 4 years ago

Quick question - you commit with two aliases - are these two different people?

Co-authored-by: Vlad Doster mvdoster@gmail.com Co-authored-by: Alex Cullen Alex_Cullen@hms.harvard.edu

Yes. @acullenhms is a co-worker.

singularityhub / stools

Adding reports #9