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sinkovit / Spatial-ecology

Space use software deployed in the Spatial Ecology Gateway
MIT License
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Feature: Jupyter Notebook to run R code #79

Open monaw opened 5 months ago

monaw commented 5 months ago

Jesse suggest that it would be very useful for power users to have the ability to run R code for their data analysis, either accepting code from user (high security concern) or we/gateway provide commonly used R scripts which the user can run on their data.

There are other hubs which have the ability for users to run their own code in Jupyter Notebook so i think this may already be possible. Jesse will investigate.

matthewwangg commented 5 months ago

In terms of using the Jupyter Notebook, we do not have write permissions so I am unable to install certain packages to use within the HubZero Jupyter Notebook. Packages I've noticed that might be needed include:

adeHabitatHR sf raster mkde

matthewwangg commented 5 months ago

To allow us to generate/provide commonly used R scripts for data analysis, we would need to either access the config file of the Jupyter Notebook, or we could create a predetermined set of scripts and have them kept within the directory for access.

monaw commented 5 months ago

i think the safest approach is to create a predetermined set (library) of scripts that have been curated and approved by us