mfleisch
commented
1 year ago Hey, can you please post the output given when launching SIRIUS from terminal.
Closed tolimika closed 1 year ago
mfleisch
commented
1 year ago Hey, can you please post the output given when launching SIRIUS from terminal.
tolimika
commented
1 year ago Yes here it is:
`Last login: Wed Mar 15 11:52:08 on ttys000
/Applications/sirius.app/Contents/MacOS/sirius ; exit;
rika@eduroam-077-080-017-040 ~ % /Applications/sirius.app/Contents/MacOS/sirius ; exit;
Mar 15, 2023 1:02:26 PM org.apache.commons.beanutils.FluentPropertyBeanIntrospector introspect
INFO: Error when creating PropertyDescriptor for public final void org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)! Ignoring this property.
INFO 13:02:28 - Sirius Workspace Successfull initialized at: /Users/rika/.sirius-5.6
INFO 13:02:28 - You run SIRIUS 5.6.3
INFO 13:02:28 - You run SIRIUS in 'GUI' mode.
INFO 13:02:28 - Sirius was compiled with the following ILP solvers: GLPK-v1.7.0 (included), Gurobi-v9.1.1, CPLEX-v12.7.1, COIN-OR-v1.17.3
INFO 13:02:28 - Treebuilder priorities loaded from 'sirius.properties' are: [CLP, GUROBI, CPLEX]
INFO 13:02:28 - CPU check done. 5 cores that handle 10 threads were found.
Application Core STATIC Block Error!
java.lang.IllegalArgumentException: Host name must not be empty
at org.apache.hc.core5.util.Args.illegalArgumentExceptionNotEmpty(Args.java:99)
at org.apache.hc.core5.util.Args.containsNoBlanks(Args.java:86)
at org.apache.hc.core5.http.HttpHost.
FINE 13:02:28 - <0>[JJob-0] Running cleanup
java.lang.Exception: java.lang.ExceptionInInitializerError
at de.unijena.bioinf.jjobs.exceptions.Exceptions.unpack(Exceptions.java:16)
at de.unijena.bioinf.jjobs.BasicJJob.doFailHandling(BasicJJob.java:170)
at de.unijena.bioinf.jjobs.BasicJJob.call(BasicJJob.java:128)
at de.unijena.bioinf.ms.frontend.SiriusGUIApplication.main(SiriusGUIApplication.java:139)
Caused by: java.lang.ExceptionInInitializerError
at de.unijena.bioinf.ms.frontend.SiriusGUIApplication$1.compute(SiriusGUIApplication.java:102)
at de.unijena.bioinf.jjobs.BasicJJob.call(BasicJJob.java:117)
... 1 more
Caused by: java.lang.RuntimeException: java.lang.IllegalArgumentException: Host name must not be empty
at de.unijena.bioinf.ms.frontend.core.ApplicationCore.
Saving session... ...copying shared history... ...saving history...truncating history files... ...completed.
[Process completed]
`
tolimika
commented
1 year ago And this happens when I run it through /Applications/sirius.app/Contents/MacOS/sirius
Last login: Wed Mar 15 13:09:00 on ttys000
rika@eduroam-077-080-017-040 ~ % /Applications/sirius.app/Contents/MacOS/sirius
Mar 15, 2023 1:09:43 PM org.apache.commons.beanutils.FluentPropertyBeanIntrospector introspect
INFO: Error when creating PropertyDescriptor for public final void org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)! Ignoring this property.
INFO 13:09:44 - Sirius Workspace Successfull initialized at: /Users/rika/.sirius-5.6
INFO 13:09:44 - You run SIRIUS 5.6.3
INFO 13:09:44 - You run SIRIUS in 'GUI' mode.
INFO 13:09:44 - Sirius was compiled with the following ILP solvers: GLPK-v1.7.0 (included), Gurobi-v9.1.1, CPLEX-v12.7.1, COIN-OR-v1.17.3
INFO 13:09:44 - Treebuilder priorities loaded from 'sirius.properties' are: [CLP, GUROBI, CPLEX]
INFO 13:09:44 - CPU check done. 5 cores that handle 10 threads were found.
Application Core STATIC Block Error!
java.lang.IllegalArgumentException: Host name must not be empty
at org.apache.hc.core5.util.Args.illegalArgumentExceptionNotEmpty(Args.java:99)
at org.apache.hc.core5.util.Args.containsNoBlanks(Args.java:86)
at org.apache.hc.core5.http.HttpHost.
FINE 13:09:44 - <0>[JJob-0] Running cleanup
java.lang.Exception: java.lang.ExceptionInInitializerError
at de.unijena.bioinf.jjobs.exceptions.Exceptions.unpack(Exceptions.java:16)
at de.unijena.bioinf.jjobs.BasicJJob.doFailHandling(BasicJJob.java:170)
at de.unijena.bioinf.jjobs.BasicJJob.call(BasicJJob.java:128)
at de.unijena.bioinf.ms.frontend.SiriusGUIApplication.main(SiriusGUIApplication.java:139)
Caused by: java.lang.ExceptionInInitializerError
at de.unijena.bioinf.ms.frontend.SiriusGUIApplication$1.compute(SiriusGUIApplication.java:102)
at de.unijena.bioinf.jjobs.BasicJJob.call(BasicJJob.java:117)
... 1 more
Caused by: java.lang.RuntimeException: java.lang.IllegalArgumentException: Host name must not be empty
at de.unijena.bioinf.ms.frontend.core.ApplicationCore.
mfleisch
commented
1 year ago should be fixed in current version. please reopen if not.
Hi, I have installed Sirius on my mac yesterday. Software was working normally at first. But now it doesn't want to open at all. I see the small picture with "starting sirius", but then it turns off. I've tried launching it through terminal and reinstalling, but nothing helped.
Does someone know what could be the problem?
Thanks in advance.