Export Issues with Sirius 5.8.3

[hfchang12]

Good evening,

I am currently facing challenges with exporting files in Sirius 5.8.3 on Mac. Specifically, I am unable to export the following three files: id/formula_candidate.tsv id/structure_candidate.tsv canopus_summary.tsv

Despite executing the provided command: -o {odir} -i {mgf} formula --profile qtof --database all '\ ' --candidates 50 --ppm-max-ms2 10 '\ ' zodiac --thresholdFilter 0.98 fingerprint structure --database all canopus write-summaries'\

The exported files I currently have are: canopus_compound_summary.tsv canopus_formula_summary.tsv canopus_neg.tsv canopus_npc_neg.tsv canopus_npc.tsv canopus.tsv compound_identifications.tsv csi_fingerid_neg.tsv csi_fingerid.tsv formula_identifications.tsv report.mztab

I am seeking guidance on how to rectify this issue and successfully export the three mentioned files. Your assistance in this matter would be highly appreciated.

Thank you in advance for your time.

[mfleisch]

Hey, the command works as expected for me. I get:

• id/formula_candidate**s**.tsv
• id/structure_candidate**s**.tsv

Are you just missing the s?

canopus_summary.tsv are not expected to exist. Only canopus_compound_summary.tsv and canopus_formula_summary.tsv are expected. Could be that canopus_formula_summary.tsv was called canopus_summary.tsv in the past.

I am closing this since it might already been stale due to the long response time. Feel free to reopen in case you still have issues with the export. If so please provide some example data.