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sirius-ms / sirius

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
GNU Affero General Public License v3.0
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Under win10, sirius can run normally, but after upgrading to Win11, sirius cannot run normally #53

Closed linkai1208 closed 2 years ago

linkai1208 commented 2 years ago

Under win10, sirius can run normally, but after upgrading to Win11, sirius cannot run normally. Can you tell me the reason? thanks！

INFO 17:29:45 - Sirius Workspace Successfull initialized at: C:\Users\SLG.sirius-4.9 INFO 17:29:45 - You run SIRIUS 4.9.9 INFO 17:29:45 - Sirius was compiled with the following ILP solvers: GLPK-v1.7.0 (included), Gurobi-v9.1.1, CPLEX-v12.7.1, COIN-OR-v1.17.3 INFO 17:29:45 - Treebuilder priorities loaded from 'sirius.properties' are: [GUROBI, CPLEX, CLP, GLPK] Application Core STATIC Block Error! java.lang.IllegalStateException: Unmapped relationship: 7 at com.sun.jna.platform.win32.WinNT$SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX.fromPointer(WinNT.java:3033) at com.sun.jna.platform.win32.Kernel32Util.getLogicalProcessorInformationEx(Kernel32Util.java:715) at oshi.driver.windows.LogicalProcessorInformation.getLogicalProcessorInformationEx(LogicalProcessorInformation.java:61) at oshi.hardware.platform.windows.WindowsCentralProcessor.initProcessorCounts(WindowsCentralProcessor.java:149) at oshi.hardware.common.AbstractCentralProcessor.(AbstractCentralProcessor.java:73) at oshi.hardware.platform.windows.WindowsCentralProcessor.(WindowsCentralProcessor.java:68) at oshi.hardware.platform.windows.WindowsHardwareAbstractionLayer.createProcessor(WindowsHardwareAbstractionLayer.java:60) at oshi.util.Memoizer$1.get(Memoizer.java:87) at oshi.hardware.common.AbstractHardwareAbstractionLayer.getProcessor(AbstractHardwareAbstractionLayer.java:66) at de.unijena.bioinf.ms.frontend.core.ApplicationCore.(ApplicationCore.java:285) at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.run(SiriusCLIApplication.java:108) at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.main(SiriusCLIApplication.java:53) at de.unijena.bioinf.ms.frontend.SiriusGUIApplication.main(SiriusGUIApplication.java:56) SEVERE 17:29:45 - Unexpected Error! java.lang.ExceptionInInitializerError at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.run(SiriusCLIApplication.java:108) at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.main(SiriusCLIApplication.java:53) at de.unijena.bioinf.ms.frontend.SiriusGUIApplication.main(SiriusGUIApplication.java:56) Caused by: java.lang.RuntimeException: java.lang.IllegalStateException: Unmapped relationship: 7 at de.unijena.bioinf.ms.frontend.core.ApplicationCore.(ApplicationCore.java:305) ... 3 more Caused by: java.lang.IllegalStateException: Unmapped relationship: 7 at com.sun.jna.platform.win32.WinNT$SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX.fromPointer(WinNT.java:3033) at com.sun.jna.platform.win32.Kernel32Util.getLogicalProcessorInformationEx(Kernel32Util.java:715) at oshi.driver.windows.LogicalProcessorInformation.getLogicalProcessorInformationEx(LogicalProcessorInformation.java:61) at oshi.hardware.platform.windows.WindowsCentralProcessor.initProcessorCounts(WindowsCentralProcessor.java:149) at oshi.hardware.common.AbstractCentralProcessor.(AbstractCentralProcessor.java:73) at oshi.hardware.platform.windows.WindowsCentralProcessor.(WindowsCentralProcessor.java:68) at oshi.hardware.platform.windows.WindowsHardwareAbstractionLayer.createProcessor(WindowsHardwareAbstractionLayer.java:60) at oshi.util.Memoizer$1.get(Memoizer.java:87) at oshi.hardware.common.AbstractHardwareAbstractionLayer.getProcessor(AbstractHardwareAbstractionLayer.java:66) at de.unijena.bioinf.ms.frontend.core.ApplicationCore.(ApplicationCore.java:285) ... 3 more

mfleisch commented 2 years ago

Hey, thanks for the report. We currently have no Windows 11 infrastructure available for detailed testing but are working on it.

However, I deployed a pre-release version that might fix your problem. Can you please try if the the following version is working. https://github.com/boecker-lab/sirius/releases/tag/v4.9.11-SNAPSHOT

mfleisch commented 2 years ago

FYI: you can also use the new 4.9.12 release for testing.