FluxSimulator fasta compiler erroneous

[GoogleCodeExporter]

Which build of the program(s)?
(20090815)

What operating system you use?
(unix32, unix64)

the fasta compiler converts a .bed line like:
chrI|345|595|chrI:335-792W#66.1.1#8:262|0|-|0|0|0,0,0|1|250|0

into a sequence originating form
chrI
starting at: chromEnd
ending at:   chromEnd+(chromEnd-chromStart).
in case of the example line 595 to 845.
this seems only to happen with watson strand exons "-"-strand reads.

Original issue reported on code.google.com by mun...@gmail.com on 21 Aug 2009 at 1:36

[GoogleCodeExporter]

Reproduced, bug is a consequence of recent change in BEDobject file structure. 

Bug affects all reads derived from the Crick DNA strand, i.e., antisense reads 
of
transcripts on the forward strand and sense reads on transcripts on the reverse 
strand.

Original comment by gmicha@gmail.com on 24 Aug 2009 at 8:30

• Changed state: Accepted
• Added labels: Priority-High, Simulator
• Removed labels: Priority-Medium

[GoogleCodeExporter]

Fixed in build 20090824

Original comment by gmicha@gmail.com on 24 Aug 2009 at 9:29

• Changed state: Fixed