"Create New Run" Window error

[GoogleCodeExporter]

For which program(s) you want a new feature?
(Simulator)

Which build of the program(s)?

What operating system you use?
(unix32, unix64)

What steps will reproduce the problem?
1. start simulator
2. click project->new
3. click genome folder: Browse..
4. select a folder

What is the expected output? What do you see instead?
expected: nothing
instead:
Exception occurred during event dispatching:
java.lang.NullPointerException

Feel free to provide any additional information below.
full error message is:
Exception occurred during event dispatching:
java.lang.NullPointerException
        at genome.sequencing.rnaseq.simulation.A.K.U(Unknown Source)
        at genome.sequencing.rnaseq.simulation.A.K.A(Unknown Source)
        at genome.sequencing.rnaseq.simulation.A.H.A(Unknown Source)
        at
genome.sequencing.rnaseq.simulation.A.H$20.actionPerformed(Unknown Source)
        at
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
        at
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
        at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
        at
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
        at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.jav
a:236)
        at java.awt.Component.processMouseEvent(Component.java:6041)
        at javax.swing.JComponent.processMouseEvent(JComponent.java:3265)
        at java.awt.Component.processEvent(Component.java:5806)
        at java.awt.Container.processEvent(Container.java:2058)
        at java.awt.Component.dispatchEventImpl(Component.java:4413)
        at java.awt.Container.dispatchEventImpl(Container.java:2116)
        at java.awt.Component.dispatchEvent(Component.java:4243)
        at
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4322)
        at
java.awt.LightweightDispatcher.processMouseEvent(Container.java:3986)
        at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3916)
        at java.awt.Container.dispatchEventImpl(Container.java:2102)
        at java.awt.Window.dispatchEventImpl(Window.java:2440)
        at java.awt.Component.dispatchEvent(Component.java:4243)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
        at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:273
)
        at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:183)
        at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:177)
        at java.awt.Dialog$1.run(Dialog.java:1045)
        at java.awt.Dialog$3.run(Dialog.java:1097)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.awt.Dialog.show(Dialog.java:1095)
        at java.awt.Component.show(Component.java:1422)
        at java.awt.Component.setVisible(Component.java:1375)
        at java.awt.Window.setVisible(Window.java:806)
        at java.awt.Dialog.setVisible(Dialog.java:985)
        at
genome.sequencing.rnaseq.simulation.A.H$8.actionPerformed(Unknown Source)
        at
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
        at
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
        at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
        at
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
        at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.jav
a:236)
        at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
        at java.awt.Component.processMouseEvent(Component.java:6041)
        at javax.swing.JComponent.processMouseEvent(JComponent.java:3265)
        at java.awt.Component.processEvent(Component.java:5806)
        at java.awt.Container.processEvent(Container.java:2058)
        at java.awt.Component.dispatchEventImpl(Component.java:4413)
        at java.awt.Container.dispatchEventImpl(Container.java:2116)
        at java.awt.Component.dispatchEvent(Component.java:4243)
        at
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4322)
        at
java.awt.LightweightDispatcher.processMouseEvent(Container.java:3986)
        at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3916)
        at java.awt.Container.dispatchEventImpl(Container.java:2102)
        at java.awt.Window.dispatchEventImpl(Window.java:2440)
        at java.awt.Component.dispatchEvent(Component.java:4243)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
        at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:273
)
        at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:183)
        at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:173
)
        at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:168)
        at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:160)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:121)

Original issue reported on code.google.com by mun...@gmail.com on 29 Aug 2009 at 1:31

[GoogleCodeExporter]

the build showing this erros is: 20090824.
sorry, i forgot mentioning it in the report.

Original comment by mun...@gmail.com on 29 Aug 2009 at 1:32

[GoogleCodeExporter]

Reproduced, setting Genome folder in the New Project Dialog *before* setting 
all 
filenames for parameter file, profile, library and sequencing file triggers 
NullPointerException.

The reason is rather stupid and arised by development history because genomic 
sequence and fasta/fastq output are implemented as an optional add on and some 
methods didnt expect their presence with an uncomplete set of mandatory 
parameters.

Fixed all NullPointers as far as I could see, performed a straightforward alpha 
test 
with the New Project dialog.

Fixed in build 20090831.

Original comment by gmicha@gmail.com on 31 Aug 2009 at 1:13

• Changed state: Fixed
• Added labels: Simulator