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sivarajankumar / fluxcapacitor

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size selection problem #40

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
I set the value of lambda is 900 and size range is from 200 to 250.
I think the length of transcripts from 250 to 900 should not generate reads
because these transcripts will not be fragmented, but I found there are
some reads are generated from these transcripts.

chr1:3361086-3361517W   U319578-1   NC  432 3.2004026106484196E-6   16  0.0 0
4.168008244320308E-6    4
chr1:3579693-3580343W   U311358-1   NC  651 9.801232995110786E-6    49  0.0 0
6.252012366480461E-6    6
chr1:181890603-182095899W   U096738-1   NC  366 2.0202541479718147E-5   101
0.0 0   3.230206389348238E-5    31

Original issue reported on code.google.com by Guorong...@gmail.com on 5 Jun 2010 at 7:37

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GoogleCodeExporter commented 8 years ago 
Hi Guorong,

as I felt this may be of general interest, find my answer in the wiki:

http://fluxcapacitor.wikidot.com/forum/t-246594/size-selection-problem

Best, micha

Original comment by gmicha@gmail.com on 7 Jun 2010 at 7:20