Error message - Parameter FASTQ not found

[GoogleCodeExporter]

I downloaded the fluxsimulator_demo_yeast example and I run the yeast_demp.par. 
It run fine. So I wanted to generate also fastq files and I just added FASTQ 
YES to the file as an additional line. When I now run the program I get the 
error message

Parameter FASTQ not found

Original issue reported on code.google.com by matthias...@gmail.com on 16 Nov 2011 at 5:01

[GoogleCodeExporter]

I'll take a look

Original comment by thasso.g...@gmail.com on 16 Nov 2011 at 6:29

• Changed state: Accepted
• Added labels: Simulator

[GoogleCodeExporter]

The parameter is called FASTA. If you specify an error model, i.e. ERR_FILE 76 
or ERR_FILE 35, a fastq file will be generated, otherwise a fasta file is 
generated. 

I agree the name is a bit confusing, but wanted to have a single parameter for 
fasta/fastq creation.

Right now, the simulator comes with two error models, 35 and 76, and a model 
generator (flux -t errormodel --help). The only drawback is that the current 
model generator work only with GEM mappings.

Original comment by thasso.g...@gmail.com on 25 Nov 2011 at 3:05

• Changed state: WontFix