I am running the RC5 version of the Simulator. I am trying to simulate reads
with quality values from the human genome. I downloaded contigs and annotation
from ensembl (ftp://ftp.ensembl.org/pub/release-66/fasta/homo_sapiens/dna/ and
ftp://ftp.ensembl.org/pub/release-66/gtf/homo_sapiens/).
I had some issues with gtf annotations that had no according fasta file. For
now I just removed all annotations I have no sequence data for.
Expression is running fine after I gave the simulator 8GB memory.
Library creation crashes with a Null Pointer Exception.
I attached the complete output of th library creation run and my parameter file.
Original issue reported on code.google.com by fheeg...@googlemail.com on 17 Apr 2012 at 3:39
Original issue reported on code.google.com by
fheeg...@googlemail.comon 17 Apr 2012 at 3:39Attachments: