field value 5 missing - Githubissues

Flux-Simulator v1.2.1 (Flux Library: 1.22)

[INFO] No mode selected, executing the full pipeline (-x -l -s)
[INFO] I am collecting information on the run.
    initializing profiler   ERROR
I am working on converting genome/gtf data to FASTA file format and using 
flux-simulator for that. The demo example from the flux-simulator works without 
any problem.
After that, I downloaded genome and gtf data from 
http://hgdownload.soe.ucsc.edu/downloads.html, 
https://genome.ucsc.edu/cgi-bin/hgTables?command=start.

But while running mouse(mm9) gtf, it does not work at all and shows the error: 

[ERROR] Error while loading stats: Field 5 not found
java.lang.IllegalArgumentException: Field 5 not found
    at barna.commons.ByteArrayCharSequence.getTokenInt(ByteArrayCharSequence.java:435)
    at barna.flux.simulator.Profiler.initializeProfiler(Profiler.java:582)
    at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:383)
    at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:54)
    at barna.commons.launcher.Flux.main(Flux.java:198)

[ERROR] Error while initializing Profiler!
java.lang.RuntimeException: Error while initializing Profiler!
    at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:384)
    at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:54)
    at barna.commons.launcher.Flux.main(Flux.java:198)

Original issue reported on code.google.com by shuvracs...@gmail.com on 5 Nov 2014 at 3:08

sivarajankumar / fluxcapacitor

field value 5 missing #73