sivarajankumar / phenotype-ontologies

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Abnormality of ion homeostasis #15

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago
In Uberpheno@charite I see that "Abnormality of ion homeostasis" (HP:0003111) 
is inferred to be a subclass_of "abnormal blood homeostasis" MP:0009642. 
Neither MPO or HPO do assert this in their class-hierarchy. Two explanations 
for that inference are shown in attached screenshot. 

The reason seems to be that suddenly someone decided, that in the logical 
definition the ion homeostasis only inheres in the "blood". IMHO this is wrong.

Maybe, this should be checked/discussed in general because I also see that 
HP:0011030 is defined that way (i.e. inhering only in blood).

Seb

Original issue reported on code.google.com by dr.sebas...@gmail.com on 4 Apr 2014 at 8:33

Attachments:

GoogleCodeExporter commented 8 years ago

Original comment by dr.sebas...@gmail.com on 4 Apr 2014 at 2:07

GoogleCodeExporter commented 8 years ago
Logical definition is more specific than the intent of the term. I bet this 
came from a term merge. Solution: remove any mention of blood from the logical 
def. Shall I do this?

Original comment by cmung...@gmail.com on 16 Apr 2014 at 3:34

GoogleCodeExporter commented 8 years ago
I changed it using Protege. Please confirm that everything is correct. Thanks

Original comment by dr.sebas...@gmail.com on 16 Apr 2014 at 4:49