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sivarajankumar / phenotype-ontologies

Automatically exported from code.google.com/p/phenotype-ontologies
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issue with: dilated heart left ventricle #8

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
'dilated heart left ventricle' should be a subclass of 'Abnormality of the left 
ventricle', but this is not inferred.

Original issue reported on code.google.com by cmung...@gmail.com on 17 Mar 2014 at 7:12

GoogleCodeExporter commented 8 years ago 
AoLV:
has_part some 
    (quality
     and ('inheres in' some 'heart left ventricle')
     and (qualifier some abnormal))

DHLV:
has_part some 
    (dilated
     and ('inheres in' some 'heart left ventricle'))

Original comment by cmung...@gmail.com on 17 Mar 2014 at 7:26

GoogleCodeExporter commented 8 years ago 
This is weird.

I have mammal.owl open, I am doing a DL query:

has_part some
    (dilated
      and ('inheres in' some 'heart left ventricle'))

with all boxes checked

And I get nada...  I should get equivalent to DHLV...?

I suspect there is some issue with two distinct object properties with the same 
label... hate Protege for this

Original comment by cmung...@gmail.com on 17 Mar 2014 at 7:32

GoogleCodeExporter commented 8 years ago 
Seb's problem is fixed by: 
http://compbio.charite.de/svn/hpo/trunk/misc/obo-typedefs/obo-typedefs.txt

We no longer have any .obo in our pipeline, not clear why we have an issue 
here...

Original comment by cmung...@gmail.com on 17 Mar 2014 at 8:16