Generating mappability files for unpublished genome

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I am trying to create mappability files for an unpublished genome.  I have 
created a folder of fasta sequences for the genome by contig.

I cannot find any documentation for the "Mappability files generation" process 
after the "python compile.py [length]" step from the source code obtained from 
link #2.

The answer referenced in link #1 refers to a script not included in the 
mappability code download (CountMap.py versus CountMaps.py).

I would really like to use zinba, but cannot create the necessary files.  Any 
advice would be appreciated

#1) http://www.biostars.org/post/show/19547/finding-mappability-with-peakseq/

#2) http://archive.gersteinlab.org/proj/PeakSeq/Mappability_Map/Code/

Thank you

Original issue reported on code.google.com by lbs.bear...@gmail.com on 18 Sep 2012 at 11:42

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we are currently incorporating these issues into a new zinba version, check 
back soon for a comprehensive update

Original comment by homer...@gmail.com on 20 Nov 2012 at 8:54

• Changed state: Verified

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Any (good) news regarding this issue ?

Thanks,
Mathieu

Original comment by mathieu....@gmail.com on 13 Mar 2013 at 5:08

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Hello,

Were you able to to incorporate this into zinba?

Thanks,
Antelmo

Original comment by aaguilar...@gtempaccount.com on 2 Dec 2013 at 11:06