error while generating Alignability ( Abort trap: 6)

1) What operating system are you using?
OS X Version 10.8.3

2) What error message was displayed?
ibc++abi.dylib: terminate called throwing an exception
Abort trap: 6

3) What was the exact command you used that resulted in the error?
> library(zinba)
> generateAlignability(
+ mapdir='/mm10_RM_mappability_map',
+ outdir='/ZINBAresults',
+ athresh=4,
+ extension=200,
+ twoBitFile='mm10.2bit')

4) Please copy and paste any additional screen output that resulted from
running the command

Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.4.2 (2012-06-22) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.13.0 (2013-03-08) successfully loaded. See ?R.oo for help.

Attaching package: ‘R.oo’

The following object is masked from ‘package:methods’:

    getClasses, getMethods

The following object is masked from ‘package:base’:

    attach, detach, gc, load, save

R.utils v1.23.2 (2013-03-22) successfully loaded. See ?R.utils for help.

Attaching package: ‘R.utils’

The following object is masked from ‘package:utils’:

    timestamp

The following object is masked from ‘package:base’:

    cat, commandArgs, getOption, inherits, isOpen, parse, warnings

Overwriting existing directory at /ZINBAresults/ 

Starting generateAlignability

Processing chr1_GL456210_randomb.out .......
    chr1_GL456210_random .......

Processing chr1_GL456210_randomxchr1_GL456210_random.out .......
libc++abi.dylib: terminate called throwing an exception
Abort trap: 6

Original issue reported on code.google.com by alhazm...@gmail.com on 24 Jul 2013 at 8:57

sivarajankumar / zinba

error while generating Alignability ( Abort trap: 6) #50