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sivarajankumar / zinba

Automatically exported from code.google.com/p/zinba
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Unable to get chromosome length from .2bit file #52

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
1) What operating system are you using?
Ubuntu 13.04

2) What error message was displayed?
Getting chromosome lengths from .2bit file: ~/data/scripts/2bit/mm9.2bit
Trying twoBitInfo again, s is65280
Trying twoBitInfo again, s is65280
Trying twoBitInfo again, s is65280
Trying twoBitInfo again, s is65280
Trying twoBitInfo again, s is65280
... (goes into an infinite loop)

3) What was the exact command you used that resulted in the error?
coord.sbpc(coordfile="file.coords",inputfile="input.wig",outputfile="test.sbpc_o
ut",twobitfile="~/Analysis/scripts/2bit/mm9.2bit")

4) Please copy and paste any additional screen output that resulted from
running the command

Original issue reported on code.google.com by qiany...@gmail.com on 4 Nov 2013 at 9:47

GoogleCodeExporter commented 8 years ago 
never mind...I think solved it. Seems like R does NOT like soft links...

Original comment by qiany...@gmail.com on 4 Nov 2013 at 10:13