covselect.R: all models failed after model selection intermediate step

1) What operating system are you using?

Linux

2) What error message was displayed?

Error in covariateselect(file = data, selection = selecttype, loc = 
paste(outfile_subpath,  : 
  covselect.R:  all models failed after model selection intermediate step

3) What was the exact command you used that resulted in the error?

zinba(
align='zimba_results/',
numProc=4,
seq='Th1_5d_restim_FAIRE_sorted_rmdup.bed',
basecountfile='zimba_results/Th1_5d_restim_FAIRE_sorted_rmdup.basecount',
filetype="bed",
outfile="zimba_results/Th1_5d_restim_FAIRE_sorted_rmdup_zimba",
twoBit='../zimba_files/mm9.2bit',
extension=134,
printFullOut=1,
refinepeaks=1,
broad=F,
input="none"
)

4) Please copy and paste any additional screen output that resulted from
running the command

--------BUILD WINDOWS COMPLETE-------

--------STARTING MODEL SELECTION-------- 2013-12-13 12:40:21 

Specified chromosome not found or specified, using 
zimba_results/Th1_5d_restim_FAIRE_sorted_rmdup_zimba_files/Th1_5d_restim_FAIRE_s
orted_rmdup_chrM_win250bp_offset125bp.txt 
$`1`
exp_count ~ 1
<environment: 0x2876648>

$`2`
exp_count ~ align_perc + 1
<environment: 0x2876648>

$`3`
exp_count ~ exp_cnvwin_log + 1
<environment: 0x2876648>

$`4`
exp_count ~ gcPerc + 1
<environment: 0x2876648>

$`5`
exp_count ~ align_perc + exp_cnvwin_log + 1
<environment: 0x2876648>

$`6`
exp_count ~ align_perc + gcPerc + 1
<environment: 0x2876648>

$`7`
exp_count ~ exp_cnvwin_log + gcPerc + 1
<environment: 0x2876648>

$`8`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + 1
<environment: 0x2876648>

$`9`
exp_count ~ align_perc + exp_cnvwin_log + align_perc:exp_cnvwin_log + 
    1
<environment: 0x2876648>

$`10`
exp_count ~ align_perc + gcPerc + align_perc:gcPerc + 1
<environment: 0x2876648>

$`11`
exp_count ~ exp_cnvwin_log + gcPerc + exp_cnvwin_log:gcPerc + 
    1
<environment: 0x2876648>

$`12`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    1
<environment: 0x2876648>

$`13`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:gcPerc + 
    1
<environment: 0x2876648>

$`14`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + exp_cnvwin_log:gcPerc + 
    1
<environment: 0x2876648>

$`15`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    align_perc:gcPerc + 1
<environment: 0x2876648>

$`16`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    exp_cnvwin_log:gcPerc + 1
<environment: 0x2876648>

$`17`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:gcPerc + 
    exp_cnvwin_log:gcPerc + 1
<environment: 0x2876648>

$`18`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    align_perc:gcPerc + exp_cnvwin_log:gcPerc + 1
<environment: 0x2876648>

$`19`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    align_perc:gcPerc + exp_cnvwin_log:gcPerc + align_perc:exp_cnvwin_log:gcPerc + 
    1
<environment: 0x2876648>

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.............................................Error in covariateselect(file = 
data, selection = selecttype, loc = paste(outfile_subpath,  : 
  covselect.R:  all models failed after model selection intermediate step
Original issue reported on code.google.com by judyhe1...@gmail.com on 13 Dec 2013 at 12:36
sivarajankumar / zinba

covselect.R: all models failed after model selection intermediate step #53
