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sivarajankumar / zinba

Automatically exported from code.google.com/p/zinba
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Error in covariateselect #61

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
1) What operating system are you using?
Ubuntu 14.04

2) What error message was displayed?

Erreur dans covariateselect(file = data, selection = selecttype, loc = 
paste(outfile_subpath,  : 
  covselect.R:  all models failed after model selection intermediate step

3) What was the exact command you used that resulted in the error?

zinba(
  align='results/adipocytes/zinba/sorties_zinba',
  numProc=4,
  seq='results/adipocytes/hits/faire_3T3L1_day8.hits',
  basecountfile='results/adipocytes/zinba/necessary_files/faire_3T3L1_day8.basecount',
  filetype="bowtie",
  outfile="results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8",
  twoBit="results/adipocytes/zinba/necessary_files/mm9.2bit",
  extension=300,
  printFullOut=1,
  refinepeaks=1,
  broad=F,
  input="none",
  FDR=0.05
)

4) Please copy and paste any additional screen output that resulted from
running the command
> zinba(
+   align='results/adipocytes/zinba/sorties_zinba',
+   numProc=4,
+   seq='results/adipocytes/hits/faire_3T3L1_day8.hits',
+   
basecountfile='results/adipocytes/zinba/necessary_files/faire_3T3L1_day8.basecou
nt',
+   filetype="bowtie",
+   outfile="results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8",
+   twoBit="results/adipocytes/zinba/necessary_files/mm9.2bit",
+   extension=300,
+   printFullOut=1,
+   refinepeaks=1,
+   broad=F,
+   input="none",
+   FDR=0.05
+ )
[1] "parameters in effect:"
$filelist
NULL

$formula
NULL

$formulaE
NULL

$formulaZ
NULL

$outfile
[1] "results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8"

$seq
[1] "results/adipocytes/hits/faire_3T3L1_day8.hits"

$align
[1] "results/adipocytes/zinba/sorties_zinba"

$input
[1] "none"

$twoBit
[1] "results/adipocytes/zinba/necessary_files/mm9.2bit"

$winSize
[1] 250

$offset
[1] 125

$cnvWinSize
[1] 1e+05

$cnvOffset
[1] 2500

$basecountfile
[1] "results/adipocytes/zinba/necessary_files/faire_3T3L1_day8.basecount"

$threshold
[1] 0.05

$peakconfidence
[1] 0.95

$tol
[1] 1e-05

$numProc
[1] 4

$buildwin
[1] 1

$winGap
[1] 0

$pWinSize
[1] 200

$pquant
[1] 1

$refinepeaks
[1] 1

$printFullOut
[1] 1

$method
[1] "mixture"

$initmethod
[1] "count"

$diff
[1] 0

$filetype
[1] "bowtie"

$extension
[1] 300

$cleanup
[1] FALSE

$selectmodel
[1] TRUE

$selectchr
[1] "chr22"

$selecttype
[1] "dirty"

$selectcovs
[1] "gcPerc"         "align_perc"     "exp_cnvwin_log"

$FDR
[1] 0.05

$interaction
[1] TRUE

Overwriting previously existing directory 
results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/

--------BEGIN BUILDING WINDOW DATA-------- 2014-05-15 13:48:35 

Importing reads from file results/adipocytes/hits/faire_3T3L1_day8.hits 
    Filetype is bowtie 
    Extension is 300 
    Importing bowtie formatted reads
    Skipped 0 reads
    Imported 10818457 reads
    Sorting reads ...
Building window data
COMPLETE

Processing chr1
    Initializing to length 197195432
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr1.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 3.82822e-06
            Refining 6 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr1_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr1_win250bp_offset125bp.txt

Processing chr2
    Initializing to length 181748087
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr2.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.275908
            Refining 1 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr2_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr2_win250bp_offset125bp.txt

Processing chr3
    Initializing to length 159599783
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr3.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 7.78757e-05
            Refining 2 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr3_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr3_win250bp_offset125bp.txt

Processing chr4
    Initializing to length 155630120
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr4.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.0207596
            Refining 3 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr4_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr4_win250bp_offset125bp.txt

Processing chr5
    Initializing to length 152537259
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr5.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.000150938
            Refining 9 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr5_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr5_win250bp_offset125bp.txt

Processing chr6
    Initializing to length 149517037
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr6.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.000210308
            Refining 3 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr6_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr6_win250bp_offset125bp.txt

Processing chr7
    Initializing to length 152524553
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr7.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.0372734
            Refining 4 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr7_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr7_win250bp_offset125bp.txt

Processing chr8
    Initializing to length 131738871
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr8.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 4.99793e-06
            Refining 9 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr8_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr8_win250bp_offset125bp.txt

Processing chr9
    Initializing to length 124076172
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr9.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.026068
            Refining 0 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr9_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr9_win250bp_offset125bp.txt

Processing chr10
    Initializing to length 129993255
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr10.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 3.93008e-05
            Refining 8 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr10_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr10_win250bp_offset125bp.txt

Processing chr11
    Initializing to length 121843856
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr11.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 1.85619e-06
            Refining 35 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr11_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr11_win250bp_offset125bp.txt

Processing chr12
    Initializing to length 121257530
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr12.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.0255878
            Refining 4 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr12_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr12_win250bp_offset125bp.txt

Processing chr13
    Initializing to length 120284312
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr13.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 2.38516e-06
            Refining 16 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr13_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr13_win250bp_offset125bp.txt

Processing chr14
    Initializing to length 125194864
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr14.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.0467922
            Refining 6 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr14_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr14_win250bp_offset125bp.txt

Processing chr15
    Initializing to length 103494974
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr15.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 1.04787e-06
            Refining 51 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr15_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr15_win250bp_offset125bp.txt

Processing chr16
    Initializing to length 98319150
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr16.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 5.18728e-07
            Refining 51 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr16_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr16_win250bp_offset125bp.txt

Processing chr17
    Initializing to length 95272651
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr17.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 3.74818e-05
            Refining 3 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr17_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr17_win250bp_offset125bp.txt

Processing chr18
    Initializing to length 90772031
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr18.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 4.82354e-07
            Refining 36 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr18_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr18_win250bp_offset125bp.txt

Processing chr19
    Initializing to length 61342430
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chr19.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 1.38932e-06
            Refining 18 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr19_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chr19_win250bp_offset125bp.txt

Processing chrX
    Initializing to length 166650296
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chrX.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.0180617
            Refining 6 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chrX_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chrX_win250bp_offset125bp.txt

Processing chrY
    Initializing to length 15902555
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chrY.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 0.00167603
            Refining 3 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chrY_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chrY_win250bp_offset125bp.txt

Processing chrM
    Initializing to length 16299
    Mapping reads to chromosome......
    Getting alignability info from:
        results/adipocytes/zinba/sorties_zinba/chrM.wig
    Getting sequence from .2bit file:
        results/adipocytes/zinba/necessary_files/mm9.2bit
    Getting counts for 100000bp windows..........
        Refining boundaries....
            Global variance is 1.92092
            Refining 0 boundaries
    Getting counts for zinba windows..........
        Offset 0bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chrM_win250bp_offset0bp.txt
        Offset 125bp......
    Printed out data to results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_chrM_win250bp_offset125bp.txt

--------BUILD WINDOWS COMPLETE-------

--------STARTING MODEL SELECTION-------- 2014-05-15 13:59:36 

Specified chromosome not found or specified, using 
results/adipocytes/zinba/sorties_zinba/faire_3T3L1_day8_files/faire_3T3L1_day8_c
hrM_win250bp_offset125bp.txt 
$`1`
exp_count ~ 1
<environment: 0xc6daef8>

$`2`
exp_count ~ align_perc + 1
<environment: 0xc6daef8>

$`3`
exp_count ~ exp_cnvwin_log + 1
<environment: 0xc6daef8>

$`4`
exp_count ~ gcPerc + 1
<environment: 0xc6daef8>

$`5`
exp_count ~ align_perc + exp_cnvwin_log + 1
<environment: 0xc6daef8>

$`6`
exp_count ~ align_perc + gcPerc + 1
<environment: 0xc6daef8>

$`7`
exp_count ~ exp_cnvwin_log + gcPerc + 1
<environment: 0xc6daef8>

$`8`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + 1
<environment: 0xc6daef8>

$`9`
exp_count ~ align_perc + exp_cnvwin_log + align_perc:exp_cnvwin_log + 
    1
<environment: 0xc6daef8>

$`10`
exp_count ~ align_perc + gcPerc + align_perc:gcPerc + 1
<environment: 0xc6daef8>

$`11`
exp_count ~ exp_cnvwin_log + gcPerc + exp_cnvwin_log:gcPerc + 
    1
<environment: 0xc6daef8>

$`12`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    1
<environment: 0xc6daef8>

$`13`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:gcPerc + 
    1
<environment: 0xc6daef8>

$`14`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + exp_cnvwin_log:gcPerc + 
    1
<environment: 0xc6daef8>

$`15`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    align_perc:gcPerc + 1
<environment: 0xc6daef8>

$`16`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    exp_cnvwin_log:gcPerc + 1
<environment: 0xc6daef8>

$`17`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:gcPerc + 
    exp_cnvwin_log:gcPerc + 1
<environment: 0xc6daef8>

$`18`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    align_perc:gcPerc + exp_cnvwin_log:gcPerc + 1
<environment: 0xc6daef8>

$`19`
exp_count ~ align_perc + exp_cnvwin_log + gcPerc + align_perc:exp_cnvwin_log + 
    align_perc:gcPerc + exp_cnvwin_log:gcPerc + align_perc:exp_cnvwin_log:gcPerc + 
    1
<environment: 0xc6daef8>

Erreur dans covariateselect(file = data, selection = selecttype, loc = 
paste(outfile_subpath,  : 
  covselect.R:  all models failed after model selection intermediate step

Original issue reported on code.google.com by j.blanch...@gmail.com on 15 May 2014 at 4:34