Open GoogleCodeExporter opened 8 years ago
1) What operating system are you using? Linux 2) What error message was displayed? 3) What was the exact command you used that resulted in the error? run.zinba(seq=bed.file,outfile=out.file,filetype='bed',align=alignability.dir,nu mProc=2, twoBit=twoBit.file,winSize=300,offset=75,extension=0,basecountfile=basealigncount.file, selectmodel=TRUE,selectchr='22',selecttype='dirty',selectcovs='align_perc',cleanup=TRUE) 4) Please copy and paste any additional screen output that resulted from running the command *** glibc detected *** /usr/lib64/R/bin/exec/R: free(): invalid next size (normal): 0x00000000024cac30 *** ======= Backtrace: ========= /lib64/libc.so.6[0x3c3c276166] /lib64/libc.so.6[0x3c3c278c93] /usr/lib64/libstdc++.so.6(_ZNSt13basic_filebufIcSt11char_traitsIcEE26_M_destroy_ internal_bufferEv+0x1e)[0x3c40a6b8ae] /usr/lib64/libstdc++.so.6(_ZNSt13basic_filebufIcSt11char_traitsIcEE5closeEv+0x64 )[0x3c40a6cb24] /nethome/wliao/lib/R/zinba/libs/zinba.so(_ZN8calcCovs14processSignalsEiiiiSsPKcS 1_SsS1_iS1_+0xc0a)[0x7ff36e4553ea] /nethome/wliao/lib/R/zinba/libs/zinba.so(buildWindows+0x332)[0x7ff36e44e9f2] /usr/lib64/R/lib/libR.so[0x38910957f1] /usr/lib64/R/lib/libR.so(Rf_eval+0x6f1)[0x38910c8fa1] /usr/lib64/R/lib/libR.so[0x38910cbfd0] /usr/lib64/R/lib/libR.so(Rf_eval+0x4ec)[0x38910c8d9c] /usr/lib64/R/lib/libR.so[0x38910cc1c0] /usr/lib64/R/lib/libR.so(Rf_eval+0x4ec)[0x38910c8d9c] /usr/lib64/R/lib/libR.so(Rf_applyClosure+0x371)[0x38910bb311] /usr/lib64/R/lib/libR.so(Rf_eval+0x21d)[0x38910c8acd] /usr/lib64/R/lib/libR.so[0x38910cc1c0] /usr/lib64/R/lib/libR.so(Rf_eval+0x4ec)[0x38910c8d9c] /usr/lib64/R/lib/libR.so(Rf_eval+0x4ec)[0x38910c8d9c] /usr/lib64/R/lib/libR.so[0x38910cc1c0] /usr/lib64/R/lib/libR.so(Rf_eval+0x4ec)[0x38910c8d9c] /usr/lib64/R/lib/libR.so(Rf_applyClosure+0x371)[0x38910bb311] /usr/lib64/R/lib/libR.so(Rf_eval+0x21d)[0x38910c8acd] /usr/lib64/R/lib/libR.so(Rf_ReplIteration+0x232)[0x38910ec8f2] /usr/lib64/R/lib/libR.so[0x38910ecb79] /usr/lib64/R/lib/libR.so(run_Rmainloop+0x44)[0x38910ed094] /usr/lib64/R/bin/exec/R(main+0x1b)[0x40084b] /lib64/libc.so.6(__libc_start_main+0xfd)[0x3c3c21ed1d] /usr/lib64/R/bin/exec/R[0x400739] ======= Memory map: ======== 00400000-00401000 r-xp 00000000 fd:01 2768024 /usr/lib64/R/bin/exec/R 00600000-00603000 rw-p 00000000 fd:01 2768024 /usr/lib64/R/bin/exec/R 009b9000-03c0f000 rw-p 00000000 00:00 0 [heap] 3890c00000-3890c0d000 r-xp 00000000 fd:01 2758497 /usr/lib64/libgomp.so.1.0.0 3890c0d000-3890e0c000 ---p 0000d000 fd:01 2758497 /usr/lib64/libgomp.so.1.0.0 3890e0c000-3890e0d000 rw-p 0000c000 fd:01 2758497 /usr/lib64/libgomp.so.1.0.0 3891000000-38912a5000 r-xp 00000000 fd:01 2756862 /usr/lib64/R/lib/libR.so 38912a5000-38914a5000 ---p 002a5000 fd:01 2756862 /usr/lib64/R/lib/libR.so 38914a5000-38914b5000 rw-p 002a5000 fd:01 2756862 /usr/lib64/R/lib/libR.so 38914b5000-38915a0000 rw-p 00000000 00:00 0 3891600000-3891788000 r-xp 00000000 fd:01 2754992 /usr/lib64/libicui18n.so.42.1 3891788000-3891988000 ---p 00188000 fd:01 2754992 /usr/lib64/libicui18n.so.42.1 3891988000-3891995000 rw-p 00188000 fd:01 2754992 /usr/lib64/libicui18n.so.42.1 3891995000-3891996000 rw-p 00000000 00:00 0 3891a00000-3891a2b000 r-xp 00000000 fd:01 2778278 /usr/lib64/R/lib/libRblas.so 3891a2b000-3891c2a000 ---p 0002b000 fd:01 2778278 /usr/lib64/R/lib/libRblas.so 3891c2a000-3891c2b000 rw-p 0002a000 fd:01 2778278 /usr/lib64/R/lib/libRblas.so 3894400000-389453f000 r-xp 00000000 fd:01 2779411 /usr/lib64/libicuuc.so.42.1 389453f000-389473f000 ---p 0013f000 fd:01 2779411 /usr/lib64/libicuuc.so.42.1 389473f000-3894750000 rw-p 0013f000 fd:01 2779411 /usr/lib64/libicuuc.so.42.1 3894750000-3894752000 rw-p 00000000 00:00 0 3c3ba00000-3c3ba20000 r-xp 00000000 fd:01 3023100 /lib64/ld-2.12.so 3c3bc1f000-3c3bc20000 r--p 0001f000 fd:01 3023100 /lib64/ld-2.12.so 3c3bc20000-3c3bc21000 rw-p 00020000 fd:01 3023100 /lib64/ld-2.12.so 3c3bc21000-3c3bc22000 rw-p 00000000 00:00 0 3c3be00000-3c3be83000 r-xp 00000000 fd:01 3023104 /lib64/libm-2.12.so 3c3be83000-3c3c082000 ---p 00083000 fd:01 3023104 /lib64/libm-2.12.so 3c3c082000-3c3c083000 r--p 00082000 fd:01 3023104 /lib64/libm-2.12.so 3c3c083000-3c3c084000 rw-p 00083000 fd:01 3023104 /lib64/libm-2.12.so 3c3c200000-3c3c38b000 r-xp 00000000 fd:01 3023101 /lib64/libc-2.12.so 3c3c38b000-3c3c58a000 ---p 0018b000 fd:01 3023101 /lib64/libc-2.12.so 3c3c58a000-3c3c58e000 r--p 0018a000 fd:01 3023101 /lib64/libc-2.12.so 3c3c58e000-3c3c58f000 rw-p 0018e000 fd:01 3023101 /lib64/libc-2.12.so 3c3c58f000-3c3c594000 rw-p 00000000 00:00 0 3c3c600000-3c3c602000 r-xp 00000000 fd:01 3023103 /lib64/libdl-2.12.so 3c3c602000-3c3c802000 ---p 00002000 fd:01 3023103 /lib64/libdl-2.12.so 3c3c802000-3c3c803000 r--p 00002000 fd:01 3023103 /lib64/libdl-2.12.so 3c3c803000-3c3c804000 rw-p 00003000 fd:01 3023103 /lib64/libdl-2.12.so 3c3d600000-3c3d61d000 r-xp 00000000 fd:01 3023141 /lib64/libtinfo.so.5.7 3c3d61d000-3c3d81d000 ---p 0001d000 fd:01 3023141 /lib64/libtinfo.so.5.7 3c3d81d000-3c3d821000 rw-p 0001d000 fd:01 3023141 /lib64/libtinfo.so.5.7 3c3e400000-3c3e4f0000 r-xp 00000000 fd:01 2756604 /usr/lib64/libgfortran.so.3.0.0 3c3e4f0000-3c3e6ef000 ---p 000f0000 fd:01 2756604 /usr/lib64/libgfortran.so.3.0.0 3c3e6ef000-3c3e6f1000 rw-p 000ef000 fd:01 2756604 /usr/lib64/libgfortran.so.3.0.0 3c3e6f1000-3c3e6f2000 rw-p 00000000 00:00 0 3c3ee00000-3c3ee16000 r-xp 00000000 fd:01 3023105 /lib64/libgcc_s-4.4.7-20120601.so.1 3c3ee16000-3c3f015000 ---p 00016000 fd:01 3023105 /lib64/libgcc_s-4.4.7-20120601.so.1 3c3f015000-3c3f016000 rw-p 00015000 fd:01 3023105 /lib64/libgcc_s-4.4.7-20120601.so.1 3c40a00000-3c40ae8000 r-xp 00000000 fd:01 2769257 /usr/lib64/libstdc++.so.6.0.13 3c40ae8000-3c40ce8000 ---p 000e8000 fd:01 2769257 /usr/lib64/libstdc++.so.6.0.13 3c40ce8000-3c40cef000 r--p 000e8000 fd:01 2769257 /usr/lib64/libstdc++.so.6.0.13 3c40cef000-3c40cf1000 rw-p 000ef000 fd:01 2769257 /usr/lib64/libstdc++.so.6.0.13 3c40cf1000-3c40d06000 rw-p 00000000 00:00 0 3c41600000-3c4163a000 r-xp 00000000 fd:01 3023142 /lib64/libreadline.so.6.0 3c4163a000-3c4183a000 ---p 0003a000 fd:01 3023142 /lib64/libreadline.so.6.0[1]+ Killed R Aborted (core dumped)
Original issue reported on code.google.com by will.l...@gmail.com on 12 Jun 2014 at 5:58
will.l...@gmail.com
Original issue reported on code.google.com by
will.l...@gmail.comon 12 Jun 2014 at 5:58