demux report barcodes are all "unknown"

sjanssen2 / spike

NGS pipeline for SNV detection in tumor context

BSD 3-Clause "New" or "Revised" License

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demux report barcodes are all "unknown" #167

Open sjanssen2 opened 5 years ago

deyazoubi commented 4 years ago

Hi Stefan, could you provide me with more information about this bug could be that this unknown barcode represent Phix?

sjanssen2 commented 4 years ago

pls compare the spike generated "demultiplex reports" with the original ones from bcl2fastq. You will see, that the table about the barcodes mismatch!