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sjanssen2 / spike

NGS pipeline for SNV detection in tumor context
BSD 3-Clause "New" or "Revised" License
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Sample Processing Flowcell Oct19 #205

Open deyazoubi opened 5 years ago

deyazoubi commented 5 years ago

a list of open and closed To-Dos:

  1. 191009SN7370479_ACDU95ACXX_spike

    • [x] Transfer raw data to HPC
    • [x] backup
    • [x] create samplesheet and push to github
    • [x] inform wetlab to delete data on instrument
    • [x] inform analysts about demux quality
    • [ ] upload to Snupy
    • [x] inform analysts about data upload to Snupy and send status_update

  2. 191009SN7370480_BCDU9LACXX

    • [x] Transfer raw data to HPC
    • [x] backup
    • [x] create samplesheet and push to github
    • [x] inform wetlab to delete data on instrument
    • [x] inform analysts about demux quality
    • [x] upload to Snupy
    • [x] inform analysts about data upload to Snupy and send status_update