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sjanssen2 / spike

NGS pipeline for SNV detection in tumor context
BSD 3-Clause "New" or "Revised" License
0 stars 4 forks source link

new project ETV6_RUNX1 #213

Open deyazoubi opened 5 years ago

deyazoubi commented 5 years ago

a list of open and closed To-Dos:

  1. 191009SN7370479_ACDU95ACXXspikeround1

    • [x] Transfer raw data to HPC
    • [x] backup
    • [x] create samplesheet and push to github
    • [x] branch name SS_479
    • [x] inform wetlab to delete data on instrument
    • [x] inform analysts about demux quality
    • [ ] upload to Snupy 2578' gatk and indel not uploaded gatk error
    • [x] inform analysts about data upload to Snupy and send status_update

  2. 191009SN7370479_ACDU95ACXXspikeround2

    • [x] create samplesheet and push to github
    • [x] branch name SS_479_2
    • [x] inform wetlab to delete data on instrument
    • [x] inform analysts about demux quality
    • [x] upload to Snupy
    • [x] inform analysts about data upload to Snupy and send status_update
deyazoubi commented 5 years ago
  1. First Round:

  1. 2nd Round:

  2. normal sample: normal (_rem)

  3. primary tumor: tumor (__rez)