sjanssen2 / spike

NGS pipeline for SNV detection in tumor context
BSD 3-Clause "New" or "Revised" License
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pigz threads #222

Open deyazoubi opened 4 years ago

deyazoubi commented 4 years ago

https://github.com/sjanssen2/spike/blob/5790af53d7abe223c6bd0f31650e5068d1d7512f/rules/rejoin_samples/Snakefile#L27

Philipp Helo Rehs @phreh100 13:05 Hi, when you use pigz you should use the -p parameter for the number of threads else pigz uses 24 instead of the number of requested cores old ' | pigz --blocksize 1024 -6 --stdout ' update could be ' | pigz --blocksize 1024 -6 -p 1 --stdout '