Philipp Helo Rehs @phreh100
13:05
Hi, when you use pigz you should use the -p parameter for the number of threads
else pigz uses 24 instead of the number of requested cores
old
' | pigz --blocksize 1024 -6 --stdout '
update could be
' | pigz --blocksize 1024 -6 -p 1 --stdout '
https://github.com/sjanssen2/spike/blob/5790af53d7abe223c6bd0f31650e5068d1d7512f/rules/rejoin_samples/Snakefile#L27
Philipp Helo Rehs @phreh100 13:05 Hi, when you use pigz you should use the -p parameter for the number of threads else pigz uses 24 instead of the number of requested cores old ' | pigz --blocksize 1024 -6 --stdout ' update could be ' | pigz --blocksize 1024 -6 -p 1 --stdout '