issues
search
sjdlabgroup
/
SAHMI
Other
64
stars
11
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
About the raw cell lines microbiome data ("cell.lines.txt" )
#24
2023xiaolan
opened
2 weeks ago
0
There was a complete mismatch between the barcodes of microbial counts and those of single cells
#23
lxzzzzzzzzzzzzzzzzzzzz
opened
4 weeks ago
0
help with Wilcoxon testing?
#22
bitcometz
opened
1 month ago
0
Is it normal that over 50% of the cells in my data contain microbiome?
#21
INeedCNS
opened
2 months ago
0
Detailed SAHMI codes
#20
duphiler
opened
3 months ago
0
run extract_microbiome_reads.r and Error in split.default(taxid, ceiling(seq_along(taxid)/opt$ntaxid))
#19
sheyong111
opened
5 months ago
0
One logical error: some species exist both in cell.line.txt and sample files but are not specified
#18
StackChan
opened
6 months ago
0
Data using SAHMI
#17
Yanh35
closed
7 months ago
0
error about sckmer_unpaired.r
#16
leogg738
closed
9 months ago
0
Bug
#15
WenyuLiang
opened
10 months ago
0
No paired FASTA for Single-cell k-mer analysis
#14
ZhangDengwei
closed
11 months ago
3
A letter asking for help on SAHMI issues
#13
CongjiaMa
opened
1 year ago
4
errors when run the taxa_counts.r function
#12
imMMQ
opened
1 year ago
5
No sample.kraken.report.mpa.txt in the output path
#11
baike687
closed
1 year ago
0
commond line format in using run_kraken.r
#10
baike687
closed
1 year ago
2
what is--ncbi_blast_path
#9
baike687
closed
1 year ago
0
One erro for the last step taxa_counts.r
#8
SkyStarStear
opened
1 year ago
1
"cell.lines.txt" or "Table S4" don't include some taxas
#7
ZhangMH2000
opened
1 year ago
1
Read1/Reads2 using in Kraken2Uniq
#6
oyxf
opened
1 year ago
2
Thanks for the wonderful algorithm
#5
Yunuuuu
closed
1 year ago
2
Different results in different computers
#4
Yunuuuu
closed
1 year ago
1
Question: shall I regard the host's cDNA sequence as reference genome?
#3
AldrichCPU-bio
closed
1 year ago
1
Does kraken step remove host reads?
#2
zyh4482
closed
1 year ago
2
requirment of fastq input
#1
Sudolin
closed
1 year ago
1