sjeknic / CellTK

Toolkit for analysis of live-cell microscopy data
MIT License
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Add option to designate bad frames #88

Closed sjeknic closed 2 years ago

sjeknic commented 2 years ago

Related to #25.

Because our scope is sometimes awful, we get frames that are out of focus or some other issue. Would be nice to designate these frames ahead of time. The way I see this happening is:

  1. Pipeline saves a list of bad frames.
  2. Pipeline.get_image_paths does not load the images.
  3. Operations run as normal on the good frames.
  4. Pipeline reshapes the stacks and inserts blank frames at the location of the bad frames.
  5. Pipeline saves the images, but does not change the stack in ImageContainer
sjeknic commented 2 years ago

Added in #93