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sjoerdk / idiscore

Deidentification of DICOM images using Attribute Confidentiality Profiles
GNU General Public License v3.0
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Scheduled weekly dependency update for week 41 #114

Closed pyup-bot closed 1 year ago

pyup-bot commented 1 year ago

Update sphinx from 4.5.0 to 5.2.3.

Changelog ### 5.2.3 ``` ===================================== * 10878: Fix base64 image embedding in ``sphinx.ext.imgmath`` * 10886: Add ``:nocontentsentry:`` flag and global domain table of contents entry control option. Patch by Adam Turner ``` ### 5.2.2 ``` ===================================== * 10872: Restore link targets for autodoc modules to the top of content. Patch by Dominic Davis-Foster. ``` ### 5.2.1 ``` ===================================== Bugs fixed ---------- * 10861: Always normalise the ``pycon3`` lexer to ``pycon``. * Fix using ``sphinx.ext.autosummary`` with modules containing titles in the module-level docstring. ``` ### 5.2.0.post0 ``` =========================================== * Recreated source tarballs for Debian maintainers. ``` ### 5.2.0 ``` ===================================== Dependencies ------------ * 10356: Sphinx now uses declarative metadata with ``pyproject.toml`` to create packages, using PyPA's ``flit`` project as a build backend. Patch by Adam Turner. Deprecated ---------- * 10843: Support for HTML 4 output. Patch by Adam Turner. Features added -------------- * 10738: napoleon: Add support for docstring types using 'of', like ``type of type``. Example: ``tuple of int``. * 10286: C++, support requires clauses not just between the template parameter lists and the declaration. * 10755: linkcheck: Check the source URL of raw directives that use the ``url`` option. * 10781: Allow :rst:role:`ref` role to be used with definitions and fields. * 10717: HTML Search: Increase priority for full title and subtitle matches in search results * 10718: HTML Search: Save search result score to the HTML element for debugging * 10673: Make toctree accept 'genindex', 'modindex' and 'search' docnames * 6316, 10804: Add domain objects to the table of contents. Patch by Adam Turner * 6692: HTML Search: Include explicit :rst:dir:`index` directive index entries in the search index and search results. Patch by Adam Turner * 10816: imgmath: Allow embedding images in HTML as base64 * 10854: HTML Search: Use browser localstorage for highlight control, stop storing highlight parameters in URL query strings. Patch by Adam Turner. Bugs fixed ---------- * 10723: LaTeX: 5.1.0 has made the 'sphinxsetup' ``verbatimwithframe=false`` become without effect. * 10257: C++, ensure consistent non-specialization template argument representation. * 10729: C++, fix parsing of certain non-type template parameter packs. * 10715: Revert 10520: "Fix" use of sidebar classes in ``agogo.css_t`` ``` ### 5.1.1 ``` ===================================== Bugs fixed ---------- * 10701: Fix ValueError in the new ``deque`` based ``sphinx.ext.napolean`` iterator implementation. * 10702: Restore compatability with third-party builders. ``` ### 5.1.0 ``` ===================================== Dependencies ------------ * 10656: Support `Docutils 0.19`_. Patch by Adam Turner. .. _Docutils 0.19: https://docutils.sourceforge.io/RELEASE-NOTES.html#release-0-19-2022-07-05 Deprecated ---------- * 10467: Deprecated ``sphinx.util.stemmer`` in favour of ``snowballstemmer``. Patch by Adam Turner. * 9856: Deprecated ``sphinx.ext.napoleon.iterators``. Features added -------------- * 10444: html theme: Allow specifying multiple CSS files through the ``stylesheet`` setting in ``theme.conf`` or by setting ``html_style`` to an iterable of strings. * 10366: std domain: Add support for emphasising placeholders in :rst:dir:`option` directives through a new :confval:`option_emphasise_placeholders` configuration option. * 10439: std domain: Use the repr of some variables when displaying warnings, making whitespace issues easier to identify. * 10571: quickstart: Reduce content in the generated ``conf.py`` file. Patch by Pradyun Gedam. * 10648: LaTeX: CSS-named-alike additional :ref:`'sphinxsetup' <latexsphinxsetup>` keys allow to configure four separate border-widths, four paddings, four corner radii, a shadow (possibly inset), colours for border, background, shadow for each of the code-block, topic, attention, caution, danger, error and warning directives. * 10655: LaTeX: Explain non-standard encoding in LatinRules.xdy * 10599: HTML Theme: Wrap consecutive footnotes in an ``<aside>`` element when using Docutils 0.18 or later, to allow for easier styling. This matches the behaviour introduced in Docutils 0.19. Patch by Adam Turner. * 10518: config: Add ``include_patterns`` as the opposite of ``exclude_patterns``. Patch by Adam Turner. Bugs fixed ---------- * 10594: HTML Theme: field term colons are doubled if using Docutils 0.18+ * 10596: Build failure if Docutils version is 0.18 (not 0.18.1) due to missing ``Node.findall()`` * 10506: LaTeX: build error if highlighting inline code role in figure caption (refs: 10251) * 10634: Make -P (pdb) option work better with exceptions triggered from events * 10550: py domain: Fix spurious whitespace in unparsing various operators (``+``, ``-``, ``~``, and ``**``). Patch by Adam Turner (refs: 10551). * 10460: logging: Always show node source locations as absolute paths. * HTML Search: HTML tags are displayed as a part of object name * HTML Search: search snipets should not be folded * HTML Search: Minor errors are emitted on fetching search snipets * HTML Search: The markers for header links are shown in the search result * 10520: HTML Theme: Fix use of sidebar classes in ``agogo.css_t``. * 6679: HTML Theme: Fix inclusion of hidden toctrees in the agogo theme. * 10566: HTML Theme: Fix enable_search_shortcuts does not work * 8686: LaTeX: Text can fall out of code-block at end of page and leave artifact on next page * 10633: LaTeX: user injected ``\color`` commands in topic or admonition boxes may cause color leaks in PDF due to upstream `framed.sty <https://ctan.org/pkg/framed>`_ bug * 10638: LaTeX: framed coloured boxes in highlighted code (e.g. highlighted diffs using Pygments style ``'manni'``) inherit thickness of code-block frame * 10647: LaTeX: Only one ``\label`` is generated for ``desc_signature`` node even if it has multiple node IDs * 10579: i18n: UnboundLocalError is raised on translating raw directive * 9577, 10088: py domain: Fix warning for duplicate Python references when using ``:any:`` and autodoc. * 10548: HTML Search: fix minor summary issues. ``` ### 5.0.2 ``` ===================================== Features added -------------- * 10523: HTML Theme: Expose the Docutils's version info tuple as a template variable, ``docutils_version_info``. Patch by Adam Turner. Bugs fixed ---------- * 10538: autodoc: Inherited class attribute having docstring is documented even if :confval:`autodoc_inherit_docstring` is disabled * 10509: autosummary: autosummary fails with a shared library * 10497: py domain: Failed to resolve strings in Literal. Patch by Adam Turner. * 10523: HTML Theme: Fix double brackets on citation references in Docutils 0.18+. Patch by Adam Turner. * 10534: Missing CSS for nav.contents in Docutils 0.18+. Patch by Adam Turner. ``` ### 5.0.1 ``` ===================================== Bugs fixed ---------- * 10498: gettext: TypeError is raised when sorting warning messages if a node has no line number. Patch by Adam Turner. * 10493: HTML Theme: :rst:dir:`topic` directive is rendered incorrectly with Docutils 0.18. Patch by Adam Turner. * 10495: IndexError is raised for a :rst:role:`kbd` role having a separator. Patch by Adam Turner. ``` ### 5.0.0 ``` * 9575: autodoc: The annotation of return value should not be shown when ``autodoc_typehints="description"`` * 9648: autodoc: ``*args`` and ``**kwargs`` entries are duplicated when ``autodoc_typehints="description"`` * 8180: autodoc: Docstring metadata ignored for attributes * 10443: epub: EPUB builder can't detect the mimetype of .webp file * 10104: gettext: Duplicated locations are shown if 3rd party extension does not provide correct information * 10456: py domain: ``:meta:`` fields are displayed if docstring contains two or more meta-field * 9096: sphinx-build: the value of progress bar for paralle build is wrong * 10110: sphinx-build: exit code is not changed when error is raised on builder-finished event ```
Links - PyPI: https://pypi.org/project/sphinx - Changelog: https://pyup.io/changelogs/sphinx/

Update sphinx_autodoc_typehints from 1.18.1 to 1.19.4.

Changelog ### 1.19.2 ``` - Fix incorrect domain used for collections.abc.Callable. ``` ### 1.19.1 ``` - Fix bug for recursive type alias. ``` ### 1.19.0 ``` - Support for CPython 3.11, no longer adds `Optional` when the argument is default per [recommendation from PEP-484](https://github.com/tox-dev/sphinx-autodoc-typehints/pull/247). ``` ### 1.18.3 ``` - Support and require `nptyping>=2.1.2` ``` ### 1.18.2 ``` - Support and require `nptyping>=2.1.1` ```
Links - PyPI: https://pypi.org/project/sphinx-autodoc-typehints - Changelog: https://pyup.io/changelogs/sphinx-autodoc-typehints/

Update types-requests from 2.28.11.2 to 2.28.11.2.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/types-requests - Repo: https://github.com/python/typeshed