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sjoerdk / idiscore

Deidentification of DICOM images using Attribute Confidentiality Profiles
GNU General Public License v3.0
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Scheduled weekly dependency update for week 03 #81

Closed pyup-bot closed 2 years ago

pyup-bot commented 2 years ago

Update sphinx from 4.2.0 to 4.4.0.

Changelog ### 4.4.0 ``` ===================================== Dependencies ------------ * 10007: Use ``importlib_metadata`` for python-3.9 or older * 10007: Drop ``setuptools`` Features added -------------- * 9075: autodoc: Add a config variable :confval:`autodoc_typehints_format` to suppress the leading module names of typehints of function signatures (ex. ``io.StringIO`` -> ``StringIO``) * 9831: Autosummary now documents only the members specified in a module's ``__all__`` attribute if :confval:`autosummary_ignore_module_all` is set to ``False``. The default behaviour is unchanged. Autogen also now supports this behavior with the ``--respect-module-all`` switch. * 9555: autosummary: Improve error messages on failure to load target object * 9800: extlinks: Emit warning if a hardcoded link is replaceable by an extlink, suggesting a replacement. * 9961: html: Support nested <kbd> HTML elements in other HTML builders * 10013: html: Allow to change the loading method of JS via ``loading_method`` parameter for :meth:`Sphinx.add_js_file()` * 9551: html search: "Hide Search Matches" link removes "highlight" parameter from URL * 9815: html theme: Wrap sidebar components in div to allow customizing their layout via CSS * 9827: i18n: Sort items in glossary by translated terms * 9899: py domain: Allows to specify cross-reference specifier (``.`` and ``~``) as ``:type:`` option * 9894: linkcheck: add option ``linkcheck_exclude_documents`` to disable link checking in matched documents. * 9793: sphinx-build: Allow to use the parallel build feature in macOS on macOS and Python3.8+ * 10055: sphinx-build: Create directories when ``-w`` option given * 9993: std domain: Allow to refer an inline target (ex. ``_`target name) via :rst:role:`ref` role * 9981: std domain: Strip value part of the option directive from general index * 9391: texinfo: improve variable in ``samp`` role * 9578: texinfo: Add :confval:`texinfo_cross_references` to disable cross references for readability with standalone readers * 9822 (and 9062), add new Intersphinx role :rst:role:`external` for explict lookup in the external projects, without resolving to the local project. Bugs fixed ---------- * 9866: autodoc: doccomment for the imported class was ignored * 9883: autodoc: doccomment for the alias to mocked object was ignored * 9908: autodoc: debug message is shown on building document using NewTypes with Python 3.10 * 9968: autodoc: instance variables are not shown if __init__ method has position-only-arguments * 9194: autodoc: types under the "typing" module are not hyperlinked * 10009: autodoc: Crashes if target object raises an error on getting docstring * 10058: autosummary: Imported members are not shown when ``autodoc_class_signature = 'separated'`` * 9947: i18n: topic directive having a bullet list can't be translatable * 9878: mathjax: MathJax configuration is placed after loading MathJax itself * 9932: napoleon: empty "returns" section is generated even if no description * 9857: Generated RFC links use outdated base url * 9909: HTML, prevent line-wrapping in literal text. * 10061: html theme: Configuration values added by themes are not be able to override from conf.py * 10073: imgconverter: Unnecessary availablity check is called for "data" URIs * 9925: LaTeX: prohibit also with ``'xelatex'`` line splitting at dashes of inline and parsed literals * 9944: LaTeX: extra vertical whitespace for some nested declarations * 9940: LaTeX: Multi-function declaration in Python domain has cramped vertical spacing in latexpdf output * 10015: py domain: types under the "typing" module are not hyperlinked defined at info-field-list * 9390: texinfo: Do not emit labels inside footnotes * 9413: xml: Invalid XML was generated when cross referencing python objects * 9979: Error level messages were displayed as warning messages * 10057: Failed to scan documents if the project is placed onto the root directory * 9636: code-block: ``:dedent:`` without argument did strip newlines ``` ### 4.3.2 ``` ===================================== Bugs fixed ---------- * 9917: C and C++, parse fundamental types no matter the order of simple type specifiers. ``` ### 4.3.1 ``` ===================================== Features added -------------- * 9864: mathjax: Support chnaging the loading method of MathJax to "defer" via :confval:`mathjax_options` Bugs fixed ---------- * 9838: autodoc: AttributeError is raised on building document for functions decorated by functools.lru_cache * 9879: autodoc: AttributeError is raised on building document for an object having invalid __doc__ attribute * 9844: autodoc: Failed to process a function wrapped with functools.partial if :confval:`autodoc_preserve_defaults` enabled * 9872: html: Class namespace collision between autodoc signatures and docutils-0.17 * 9868: imgmath: Crashed if the dvisvgm command failed to convert equation * 9864: mathjax: Failed to render equations via MathJax v2. The loading method of MathJax is back to "async" method again ``` ### 4.3.0 ``` ===================================== Dependencies ------------ * Support Python 3.10 Incompatible changes -------------------- * 9649: ``searchindex.js``: the embedded data has changed format to allow objects with the same name in different domains. * 9672: The rendering of Python domain declarations is implemented with more docutils nodes to allow better CSS styling. It may break existing styling. * 9672: the signature of :py:meth:`domains.py.PyObject.get_signature_prefix` has changed to return a list of nodes instead of a plain string. * 9695: ``domains.js.JSObject.display_prefix`` has been changed into a method ``get_display_prefix`` which now returns a list of nodes instead of a plain string. * 9695: The rendering of Javascript domain declarations is implemented with more docutils nodes to allow better CSS styling. It may break existing styling. * 9450: mathjax: Load MathJax via "defer" strategy Deprecated ---------- * ``sphinx.ext.autodoc.AttributeDocumenter._datadescriptor`` * ``sphinx.writers.html.HTMLTranslator._fieldlist_row_index`` * ``sphinx.writers.html.HTMLTranslator._table_row_index`` * ``sphinx.writers.html5.HTML5Translator._fieldlist_row_index`` * ``sphinx.writers.html5.HTML5Translator._table_row_index`` Features added -------------- * 9639: autodoc: Support asynchronous generator functions * 9664: autodoc: ``autodoc-process-bases`` supports to inject reST snippet as a base class * 9691: C, added new info-field ``retval`` for :rst:dir:`c:function` and :rst:dir:`c:macro`. * C++, added new info-field ``retval`` for :rst:dir:`cpp:function`. * 9618: i18n: Add :confval:`gettext_allow_fuzzy_translations` to allow "fuzzy" messages for translation * 9672: More CSS classes on Python domain descriptions * 9695: More CSS classes on Javascript domain descriptions * 9683: Revert the removal of ``add_stylesheet()`` API. It will be kept until the Sphinx-6.0 release * 2068, add :confval:`intersphinx_disabled_reftypes` for disabling interphinx resolution of cross-references that do not have an explicit inventory specification. Specific types of cross-references can be disabled, e.g., ``std:doc`` or all cross-references in a specific domain, e.g., ``std:*``. * 9623: Allow to suppress "toctree contains reference to excluded document" warnings using :confval:`suppress_warnings` Bugs fixed ---------- * 9630: autodoc: Failed to build cross references if :confval:`primary_domain` is not 'py' * 9644: autodoc: Crashed on getting source info from problematic object * 9655: autodoc: mocked object having doc comment is warned unexpectedly * 9651: autodoc: return type field is not generated even if :confval:`autodoc_typehints_description_target` is set to "documented" when its info-field-list contains ``:returns:`` field * 9657: autodoc: The base class for a subclass of mocked object is incorrect * 9607: autodoc: Incorrect base class detection for the subclasses of the generic class * 9755: autodoc: memory addresses are shown for aliases * 9752: autodoc: Failed to detect type annotation for slots attribute * 9756: autodoc: Crashed if classmethod does not have __func__ attribute * 9757: autodoc: :confval:`autodoc_inherit_docstrings` does not effect to overridden classmethods * 9781: autodoc: :confval:`autodoc_preserve_defaults` does not support hexadecimal numeric * 9630: autosummary: Failed to build summary table if :confval:`primary_domain` is not 'py' * 9670: html: Fix download file with special characters * 9710: html: Wrong styles for even/odd rows in nested tables * 9763: html: parameter name and its type annotation are not separated in HTML * 9649: HTML search: when objects have the same name but in different domains, return all of them as result instead of just one. * 7634: intersphinx: references on the file in sub directory are broken * 9737: LaTeX: hlist is rendered as a list containing "aggedright" text * 9678: linkcheck: file extension was shown twice in warnings * 9697: py domain: An index entry with parens was registered for ``py:method`` directive with ``:property:`` option * 9775: py domain: Literal typehint was converted to a cross reference when :confval:`autodoc_typehints='description'` * 9708: needs_extension failed to check double-digit version correctly * 9688: Fix :rst:dir:`code`` does not recognize ``:class:`` option * 9733: Fix for logging handler flushing warnings in the middle of the docs build * 9656: Fix warnings without subtype being incorrectly suppressed * Intersphinx, for unresolved references with an explicit inventory, e.g., ``proj:myFunc``, leave the inventory prefix in the unresolved text. ```
Links - PyPI: https://pypi.org/project/sphinx - Changelog: https://pyup.io/changelogs/sphinx/ - Homepage: https://www.sphinx-doc.org/

Update sphinx_autodoc_typehints from 1.12.0 to 1.15.2.

Changelog ### 1.15.2 ``` - Log a warning instead of crashing when a type guard import fails to resolve - When resolving type guard imports if the target module does not have source code (such is the case for C-extension modules) do nothing instead of crashing ``` ### 1.15.1 ``` - Fix `fully_qualified` should be `typehints_fully_qualified` ``` ### 1.15.0 ``` - Resolve type guard imports before evaluating annotations for objects - Remove `set_type_checking_flag` flag as this is now done by default - Fix crash when the `inspect` module returns an invalid python syntax source - Made formatting function configurable using the option `typehints_formatter` ``` ### 1.14.1 ``` - Fixed `normalize_source_lines()` messing with the indentation of methods with decorators that have parameters starting with `def`. - Handle `ValueError` or `TypeError` being raised when signature of an object cannot be determined - Fix `KeyError` being thrown when argument is not documented (e.g. `cls` argument for class methods, and `self` for methods) ``` ### 1.14.0 ``` - Added `typehints_defaults` config option allowing to automatically annotate parameter defaults. ``` ### 1.13.1 ``` - Fixed `NewType` inserts a reference as first argument instead of a string ``` ### 1.13.0 ``` - Dropped Python 3.6 support - Python 3.10 support - Normalize async functions properly - Allow py310 style annotations (PEP-563) ```
Links - PyPI: https://pypi.org/project/sphinx-autodoc-typehints - Changelog: https://pyup.io/changelogs/sphinx-autodoc-typehints/ - Repo: https://github.com/tox-dev/sphinx-autodoc-typehints/archive/main.zip

Update pydicom from 2.2.1 to 2.2.2.

Changelog ### 2.2.2 ``` Bug fixes and DICOM dictionary update to 2021d. ```
Links - PyPI: https://pypi.org/project/pydicom - Changelog: https://pyup.io/changelogs/pydicom/ - Repo: https://github.com/pydicom/pydicom/archive/master.zip

Update factory-boy from 3.2.0 to 3.2.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/factory-boy - Changelog: https://pyup.io/changelogs/factory-boy/ - Repo: https://github.com/FactoryBoy/factory_boy

Update coverage from 5.5 to 6.2.

Changelog ### 6.2 ``` ------------------------ - Feature: Now the ``--concurrency`` setting can now have a list of values, so that threads and another lightweight threading package can be measured together, such as ``--concurrency=gevent,thread``. Closes `issue 1012`_ and `issue 1082`_. - Fix: A module specified as the ``source`` setting is imported during startup, before the user program imports it. This could cause problems if the rest of the program isn't ready yet. For example, `issue 1203`_ describes a Django setting that is accessed before settings have been configured. Now the early import is wrapped in a try/except so errors then don't stop execution. - Fix: A colon in a decorator expression would cause an exclusion to end too early, preventing the exclusion of the decorated function. This is now fixed. - Fix: The HTML report now will not overwrite a .gitignore file that already exists in the HTML output directory (follow-on for `issue 1244`_). - API: The exceptions raised by Coverage.py have been specialized, to provide finer-grained catching of exceptions by third-party code. - API: Using ``suffix=False`` when constructing a Coverage object with multiprocessing wouldn't suppress the data file suffix (`issue 989`_). This is now fixed. - Debug: The ``coverage debug data`` command will now sniff out combinable data files, and report on all of them. - Debug: The ``coverage debug`` command used to accept a number of topics at a time, and show all of them, though this was never documented. This no longer works, to allow for command-line options in the future. .. _issue 989: https://github.com/nedbat/coveragepy/issues/989 .. _issue 1012: https://github.com/nedbat/coveragepy/issues/1012 .. _issue 1082: https://github.com/nedbat/coveragepy/issues/1082 .. _issue 1203: https://github.com/nedbat/coveragepy/issues/1203 .. _changes_612: ``` ### 6.1.2 ``` -------------------------- - Python 3.11 is supported (tested with 3.11.0a2). One still-open issue has to do with `exits through with-statements <issue 1270_>`_. - Fix: When remapping file paths through the ``[paths]`` setting while combining, the ``[run] relative_files`` setting was ignored, resulting in absolute paths for remapped file names (`issue 1147`_). This is now fixed. - Fix: Complex conditionals over excluded lines could have incorrectly reported a missing branch (`issue 1271`_). This is now fixed. - Fix: More exceptions are now handled when trying to parse source files for reporting. Problems that used to terminate coverage.py can now be handled with ``[report] ignore_errors``. This helps with plugins failing to read files (`django_coverage_plugin issue 78`_). - Fix: Removed another vestige of jQuery from the source tarball (`issue 840`_). - Fix: Added a default value for a new-to-6.x argument of an internal class. This unsupported class is being used by coveralls (`issue 1273`_). Although I'd rather not "fix" unsupported interfaces, it's actually nicer with a default value. .. _django_coverage_plugin issue 78: https://github.com/nedbat/django_coverage_plugin/issues/78 .. _issue 1147: https://github.com/nedbat/coveragepy/issues/1147 .. _issue 1270: https://github.com/nedbat/coveragepy/issues/1270 .. _issue 1271: https://github.com/nedbat/coveragepy/issues/1271 .. _issue 1273: https://github.com/nedbat/coveragepy/issues/1273 .. _changes_611: ``` ### 6.1.1 ``` -------------------------- - Fix: The sticky header on the HTML report didn't work unless you had branch coverage enabled. This is now fixed: the sticky header works for everyone. (Do people still use coverage without branch measurement!? j/k) - Fix: When using explicitly declared namespace packages, the "already imported a file that will be measured" warning would be issued (`issue 888`_). This is now fixed. .. _issue 888: https://github.com/nedbat/coveragepy/issues/888 .. _changes_61: ``` ### 6.1 ``` ------------------------ - Deprecated: The ``annotate`` command and the ``Coverage.annotate`` function will be removed in a future version, unless people let me know that they are using it. Instead, the ``html`` command gives better-looking (and more accurate) output, and the ``report -m`` command will tell you line numbers of missing lines. Please get in touch if you have a reason to use ``annotate`` over those better options: nednedbatchelder.com. - Feature: Coverage now sets an environment variable, ``COVERAGE_RUN`` when running your code with the ``coverage run`` command. The value is not important, and may change in the future. Closes `issue 553`_. - Feature: The HTML report pages for Python source files now have a sticky header so the file name and controls are always visible. - Feature: The ``xml`` and ``json`` commands now describe what they wrote where. - Feature: The ``html``, ``combine``, ``xml``, and ``json`` commands all accept a ``-q/--quiet`` option to suppress the messages they write to stdout about what they are doing (`issue 1254`_). - Feature: The ``html`` command writes a ``.gitignore`` file into the HTML output directory, to prevent the report from being committed to git. If you want to commit it, you will need to delete that file. Closes `issue 1244`_. - Feature: Added support for PyPy 3.8. - Fix: More generated code is now excluded from measurement. Code such as `attrs`_ boilerplate, or doctest code, was being measured though the synthetic line numbers meant they were never reported. Once Cython was involved though, the generated .so files were parsed as Python, raising syntax errors, as reported in `issue 1160`_. This is now fixed. - Fix: When sorting human-readable names, numeric components are sorted correctly: file10.py will appear after file9.py. This applies to file names, module names, environment variables, and test contexts. - Performance: Branch coverage measurement is faster, though you might only notice on code that is executed many times, such as long-running loops. - Build: jQuery is no longer used or vendored (`issue 840`_ and `issue 1118`_). Huge thanks to Nils Kattenbeck (septatrix) for the conversion to vanilla JavaScript in `pull request 1248`_. .. _issue 553: https://github.com/nedbat/coveragepy/issues/553 .. _issue 840: https://github.com/nedbat/coveragepy/issues/840 .. _issue 1118: https://github.com/nedbat/coveragepy/issues/1118 .. _issue 1160: https://github.com/nedbat/coveragepy/issues/1160 .. _issue 1244: https://github.com/nedbat/coveragepy/issues/1244 .. _pull request 1248: https://github.com/nedbat/coveragepy/pull/1248 .. _issue 1254: https://github.com/nedbat/coveragepy/issues/1254 .. _attrs: https://www.attrs.org/ .. _changes_602: ``` ### 6.0.2 ``` -------------------------- - Namespace packages being measured weren't properly handled by the new code that ignores third-party packages. If the namespace package was installed, it was ignored as a third-party package. That problem (`issue 1231`_) is now fixed. - Packages named as "source packages" (with ``source``, or ``source_pkgs``, or pytest-cov's ``--cov``) might have been only partially measured. Their top-level statements could be marked as unexecuted, because they were imported by coverage.py before measurement began (`issue 1232`_). This is now fixed, but the package will be imported twice, once by coverage.py, then again by your test suite. This could cause problems if importing the package has side effects. - The :meth:`.CoverageData.contexts_by_lineno` method was documented to return a dict, but was returning a defaultdict. Now it returns a plain dict. It also no longer returns negative numbered keys. .. _issue 1231: https://github.com/nedbat/coveragepy/issues/1231 .. _issue 1232: https://github.com/nedbat/coveragepy/issues/1232 .. _changes_601: ``` ### 6.0.1 ``` -------------------------- - In 6.0, the coverage.py exceptions moved from coverage.misc to coverage.exceptions. These exceptions are not part of the public supported API, CoverageException is. But a number of other third-party packages were importing the exceptions from coverage.misc, so they are now available from there again (`issue 1226`_). - Changed an internal detail of how tomli is imported, so that tomli can use coverage.py for their own test suite (`issue 1228`_). - Defend against an obscure possibility under code obfuscation, where a function can have an argument called "self", but no local named "self" (`pull request 1210`_). Thanks, Ben Carlsson. .. _pull request 1210: https://github.com/nedbat/coveragepy/pull/1210 .. _issue 1226: https://github.com/nedbat/coveragepy/issues/1226 .. _issue 1228: https://github.com/nedbat/coveragepy/issues/1228 .. _changes_60: ``` ### 6.0 ``` ------------------------ - The ``coverage html`` command now prints a message indicating where the HTML report was written. Fixes `issue 1195`_. - The ``coverage combine`` command now prints messages indicating each data file being combined. Fixes `issue 1105`_. - The HTML report now includes a sentence about skipped files due to ``skip_covered`` or ``skip_empty`` settings. Fixes `issue 1163`_. - Unrecognized options in the configuration file are no longer errors. They are now warnings, to ease the use of coverage across versions. Fixes `issue 1035`_. - Fix handling of exceptions through context managers in Python 3.10. A missing exception is no longer considered a missing branch from the with statement. Fixes `issue 1205`_. - Fix another rarer instance of "Error binding parameter 0 - probably unsupported type." (`issue 1010`_). - Creating a directory for the coverage data file now is safer against conflicts when two coverage runs happen simultaneously (`pull 1220`_). Thanks, Clément Pit-Claudel. .. _issue 1035: https://github.com/nedbat/coveragepy/issues/1035 .. _issue 1105: https://github.com/nedbat/coveragepy/issues/1105 .. _issue 1163: https://github.com/nedbat/coveragepy/issues/1163 .. _issue 1195: https://github.com/nedbat/coveragepy/issues/1195 .. _issue 1205: https://github.com/nedbat/coveragepy/issues/1205 .. _pull 1220: https://github.com/nedbat/coveragepy/pull/1220 .. _changes_60b1: ``` ### 6.0b1 ``` -------------------------- - Dropped support for Python 2.7, PyPy 2, and Python 3.5. - Added support for the Python 3.10 ``match/case`` syntax. - Data collection is now thread-safe. There may have been rare instances of exceptions raised in multi-threaded programs. - Plugins (like the `Django coverage plugin`_) were generating "Already imported a file that will be measured" warnings about Django itself. These have been fixed, closing `issue 1150`_. - Warnings generated by coverage.py are now real Python warnings. - Using ``--fail-under=100`` with coverage near 100% could result in the self-contradictory message :code:`total of 100 is less than fail-under=100`. This bug (`issue 1168`_) is now fixed. - The ``COVERAGE_DEBUG_FILE`` environment variable now accepts ``stdout`` and ``stderr`` to write to those destinations. - TOML parsing now uses the `tomli`_ library. - Some minor changes to usually invisible details of the HTML report: - Use a modern hash algorithm when fingerprinting, for high-security environments (`issue 1189`_). When generating the HTML report, we save the hash of the data, to avoid regenerating an unchanged HTML page. We used to use MD5 to generate the hash, and now use SHA-3-256. This was never a security concern, but security scanners would notice the MD5 algorithm and raise a false alarm. - Change how report file names are generated, to avoid leading underscores (`issue 1167`_), to avoid rare file name collisions (`issue 584`_), and to avoid file names becoming too long (`issue 580`_). .. _Django coverage plugin: https://pypi.org/project/django-coverage-plugin/ .. _issue 580: https://github.com/nedbat/coveragepy/issues/580 .. _issue 584: https://github.com/nedbat/coveragepy/issues/584 .. _issue 1150: https://github.com/nedbat/coveragepy/issues/1150 .. _issue 1167: https://github.com/nedbat/coveragepy/issues/1167 .. _issue 1168: https://github.com/nedbat/coveragepy/issues/1168 .. _issue 1189: https://github.com/nedbat/coveragepy/issues/1189 .. _tomli: https://pypi.org/project/tomli/ .. _changes_56b1: ``` ### 5.6b1 ``` -------------------------- Note: 5.6 final was never released. These changes are part of 6.0. - Third-party packages are now ignored in coverage reporting. This solves a few problems: - Coverage will no longer report about other people's code (`issue 876`_). This is true even when using ``--source=.`` with a venv in the current directory. - Coverage will no longer generate "Already imported a file that will be measured" warnings about coverage itself (`issue 905`_). - The HTML report uses j/k to move up and down among the highlighted chunks of code. They used to highlight the current chunk, but 5.0 broke that behavior. Now the highlighting is working again. - The JSON report now includes ``percent_covered_display``, a string with the total percentage, rounded to the same number of decimal places as the other reports' totals. .. _issue 876: https://github.com/nedbat/coveragepy/issues/876 .. _issue 905: https://github.com/nedbat/coveragepy/issues/905 .. _changes_55: ```
Links - PyPI: https://pypi.org/project/coverage - Changelog: https://pyup.io/changelogs/coverage/ - Repo: https://github.com/nedbat/coveragepy

Update flake8 from 3.9.2 to 4.0.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/flake8 - Changelog: https://pyup.io/changelogs/flake8/ - Repo: https://github.com/pycqa/flake8

Update pip from 21.2.4 to 21.3.1.

Changelog ### 21.3.1 ``` =================== Bug Fixes --------- - Always refuse installing or building projects that have no ``pyproject.toml`` nor ``setup.py``. (`10531 <https://github.com/pypa/pip/issues/10531>`_) - Tweak running-as-root detection, to check ``os.getuid`` if it exists, on Unix-y and non-Linux/non-MacOS machines. (`10565 <https://github.com/pypa/pip/issues/10565>`_) - When installing projects with a ``pyproject.toml`` in editable mode, and the build backend does not support :pep:`660`, prepare metadata using ``prepare_metadata_for_build_wheel`` instead of ``setup.py egg_info``. Also, refuse installing projects that only have a ``setup.cfg`` and no ``setup.py`` nor ``pyproject.toml``. These restore the pre-21.3 behaviour. (`10573 <https://github.com/pypa/pip/issues/10573>`_) - Restore compatibility of where configuration files are loaded from on MacOS (back to ``Library/Application Support/pip``, instead of ``Preferences/pip``). (`10585 <https://github.com/pypa/pip/issues/10585>`_) Vendored Libraries ------------------ - Upgrade pep517 to 0.12.0 ``` ### 21.3 ``` ================= Deprecations and Removals ------------------------- - Improve deprecation warning regarding the copying of source trees when installing from a local directory. (`10128 <https://github.com/pypa/pip/issues/10128>`_) - Suppress location mismatch warnings when pip is invoked from a Python source tree, so ``ensurepip`` does not emit warnings on CPython ``make install``. (`10270 <https://github.com/pypa/pip/issues/10270>`_) - On Python 3.10 or later, the installation scheme backend has been changed to use ``sysconfig``. This is to anticipate the deprecation of ``distutils`` in Python 3.10, and its scheduled removal in 3.12. For compatibility considerations, pip installations running on Python 3.9 or lower will continue to use ``distutils``. (`10358 <https://github.com/pypa/pip/issues/10358>`_) - Remove the ``--build-dir`` option and aliases, one last time. (`10485 <https://github.com/pypa/pip/issues/10485>`_) - In-tree builds are now the default. ``--use-feature=in-tree-build`` is now ignored. ``--use-deprecated=out-of-tree-build`` may be used temporarily to ease the transition. (`10495 <https://github.com/pypa/pip/issues/10495>`_) - Un-deprecate source distribution re-installation behaviour. (`8711 <https://github.com/pypa/pip/issues/8711>`_) Features -------- - Replace vendored appdirs with platformdirs. (`10202 <https://github.com/pypa/pip/issues/10202>`_) - Support `PEP 610 <https://www.python.org/dev/peps/pep-0610/>`_ to detect editable installs in ``pip freeze`` and ``pip list``. The ``pip list`` column output has a new ``Editable project location`` column, and the JSON output has a new ``editable_project_location`` field. (`10249 <https://github.com/pypa/pip/issues/10249>`_) - ``pip freeze`` will now always fallback to reporting the editable project location when it encounters a VCS error while analyzing an editable requirement. Before, it sometimes reported the requirement as non-editable. (`10410 <https://github.com/pypa/pip/issues/10410>`_) - ``pip show`` now sorts ``Requires`` and ``Required-By`` alphabetically. (`10422 <https://github.com/pypa/pip/issues/10422>`_) - Do not raise error when there are no files to remove with ``pip cache purge/remove``. Instead log a warning and continue (to log that we removed 0 files). (`10459 <https://github.com/pypa/pip/issues/10459>`_) - When backtracking during dependency resolution, prefer the dependencies which are involved in the most recent conflict. This can significantly reduce the amount of backtracking required. (`10479 <https://github.com/pypa/pip/issues/10479>`_) - Cache requirement objects, to improve performance reducing reparses of requirement strings. (`10550 <https://github.com/pypa/pip/issues/10550>`_) - Support editable installs for projects that have a ``pyproject.toml`` and use a build backend that supports :pep:`660`. (`8212 <https://github.com/pypa/pip/issues/8212>`_) - When a revision is specified in a Git URL, use git's partial clone feature to speed up source retrieval. (`9086 <https://github.com/pypa/pip/issues/9086>`_) - Add a ``--debug`` flag, to enable a mode that doesn't log errors and propagates them to the top level instead. This is primarily to aid with debugging pip's crashes. (`9349 <https://github.com/pypa/pip/issues/9349>`_) - If a host is explicitly specified as trusted by the user (via the --trusted-host option), cache HTTP responses from it in addition to HTTPS ones. (`9498 <https://github.com/pypa/pip/issues/9498>`_) Bug Fixes --------- - Present a better error message, when a ``file:`` URL is not found. (`10263 <https://github.com/pypa/pip/issues/10263>`_) - Fix the auth credential cache to allow for the case in which the index url contains the username, but the password comes from an external source, such as keyring. (`10269 <https://github.com/pypa/pip/issues/10269>`_) - Fix double unescape of HTML ``data-requires-python`` and ``data-yanked`` attributes. (`10378 <https://github.com/pypa/pip/issues/10378>`_) - New resolver: Fixes depth ordering of packages during resolution, e.g. a dependency 2 levels deep will be ordered before a dependency 3 levels deep. (`10482 <https://github.com/pypa/pip/issues/10482>`_) - Correctly indent metadata preparation messages in pip output. (`10524 <https://github.com/pypa/pip/issues/10524>`_) Vendored Libraries ------------------ - Remove appdirs as a vendored dependency. - Upgrade distlib to 0.3.3 - Upgrade distro to 1.6.0 - Patch pkg_resources to use platformdirs rather than appdirs. - Add platformdirs as a vendored dependency. - Upgrade progress to 1.6 - Upgrade resolvelib to 0.8.0 - Upgrade urllib3 to 1.26.7 Improved Documentation ---------------------- - Update links of setuptools as setuptools moved these documents. The Simple Repository link now points to PyPUG as that is the canonical place of packaging specification, and setuptools's ``easy_install`` is deprecated. (`10430 <https://github.com/pypa/pip/issues/10430>`_) - Create a "Build System Interface" reference section, for documenting how pip interacts with build systems. (`10497 <https://github.com/pypa/pip/issues/10497>`_) ```
Links - PyPI: https://pypi.org/project/pip - Changelog: https://pyup.io/changelogs/pip/ - Homepage: https://pip.pypa.io/

Update tox from 3.24.4 to 3.24.5.

Changelog ### 3.24.5 ``` Bugfixes ^^^^^^^^ - Fixed an issue where ``usedevelop`` would cause an invocation error if setup.py does not exist. -- by :user:`VincentVanlaer` `2197 <https://github.com/tox-dev/tox/issues/2197>`_ ```
Links - PyPI: https://pypi.org/project/tox - Changelog: https://pyup.io/changelogs/tox/ - Docs: https://tox.readthedocs.io

Update twine from 3.4.2 to 3.7.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/twine - Docs: https://twine.readthedocs.io/

Update watchdog from 2.1.5 to 2.1.6.

Changelog ### 2.1.6 ``` ~~~~~ 2021-10-01 • `full history <https://github.com/gorakhargosh/watchdog/compare/v2.1.5...v2.1.6>`__ - [bsd] Fixed returned paths in ``kqueue.py`` and restored the overall results of the test suite. (`842 <https://github.com/gorakhargosh/watchdog/pull/842>`_) - [bsd] Updated FreeBSD CI support .(`841 <https://github.com/gorakhargosh/watchdog/pull/841>`_) - [watchmedo] Removed the ``argh`` dependency in favor of the builtin ``argparse`` module. (`836 <https://github.com/gorakhargosh/watchdog/pull/836>`_) - [watchmedo] Removed unexistant ``WindowsApiAsyncObserver`` references and ``--debug-force-winapi-async`` arguments. - [watchmedo] Improved the help output. - Thanks to our beloved contributors: knobix, AndreaRe9, BoboTiG ```
Links - PyPI: https://pypi.org/project/watchdog - Changelog: https://pyup.io/changelogs/watchdog/ - Repo: https://github.com/gorakhargosh/watchdog - Docs: https://pythonhosted.org/watchdog/

Update pre-commit from 2.15.0 to 2.16.0.

Changelog ### 2.16.0 ``` =================== Features - add warning for regexes containing `[\/]` or `[/\\]`. - 2053 PR by radek-sprta. - 2043 issue by asottile. - move hook template back to `bash` resolving shebang-portability issues. - 2065 PR by asottile. - add support for `fail_fast` at the individual hook level. - 2097 PR by colens3. - 1143 issue by potiuk. - allow passthrough of `GIT_CONFIG_KEY_*`, `GIT_CONFIG_VALUE_*`, and `GIT_CONFIG_COUNT`. - 2136 PR by emzeat. Fixes - fix pre-commit autoupdate for `core.useBuiltinFSMonitor=true` on windows. - 2047 PR by asottile. - 2046 issue by lcnittl. - fix temporary file stashing with for `submodule.recurse=1`. - 2071 PR by asottile. - 2063 issue by a666. - ban broken importlib-resources versions. - 2098 PR by asottile. - replace `exit(...)` with `raise SystemExit(...)` for portability. - 2103 PR by asottile. - 2104 PR by asottile. ```
Links - PyPI: https://pypi.org/project/pre-commit - Changelog: https://pyup.io/changelogs/pre-commit/ - Repo: https://github.com/pre-commit/pre-commit

Update requests from 2.26.0 to 2.27.1.

Changelog ### 2.27.1 ``` ------------------- **Bugfixes** - Fixed parsing issue that resulted in the `auth` component being dropped from proxy URLs. (6028) ``` ### 2.27.0 ``` ------------------- **Improvements** - Officially added support for Python 3.10. (5928) - Added a `requests.exceptions.JSONDecodeError` to unify JSON exceptions between Python 2 and 3. This gets raised in the `response.json()` method, and is backwards compatible as it inherits from previously thrown exceptions. Can be caught from `requests.exceptions.RequestException` as well. (5856) - Improved error text for misnamed `InvalidSchema` and `MissingSchema` exceptions. This is a temporary fix until exceptions can be renamed (Schema->Scheme). (6017) - Improved proxy parsing for proxy URLs missing a scheme. This will address recent changes to `urlparse` in Python 3.9+. (5917) **Bugfixes** - Fixed defect in `extract_zipped_paths` which could result in an infinite loop for some paths. (5851) - Fixed handling for `AttributeError` when calculating length of files obtained by `Tarfile.extractfile()`. (5239) - Fixed urllib3 exception leak, wrapping `urllib3.exceptions.InvalidHeader` with `requests.exceptions.InvalidHeader`. (5914) - Fixed bug where two Host headers were sent for chunked requests. (5391) - Fixed regression in Requests 2.26.0 where `Proxy-Authorization` was incorrectly stripped from all requests sent with `Session.send`. (5924) - Fixed performance regression in 2.26.0 for hosts with a large number of proxies available in the environment. (5924) - Fixed idna exception leak, wrapping `UnicodeError` with `requests.exceptions.InvalidURL` for URLs with a leading dot (.) in the domain. (5414) **Deprecations** - Requests support for Python 2.7 and 3.6 will be ending in 2022. While we don't have exact dates, Requests 2.27.x is likely to be the last release series providing support. ```
Links - PyPI: https://pypi.org/project/requests - Changelog: https://pyup.io/changelogs/requests/ - Docs: https://requests.readthedocs.io
pyup-bot commented 2 years ago

Closing this in favor of #82