Package Directory ARTDeco Does not Exist

[faleevz]

Hi there! My apologies if its a bit of a stupid question- I am just starting out with conda. I am trying to download ARTDeco but unfortunately hit an error when I try to install setup.py

I have downloaded all the necessary packages apart from DEseq2. When I try to pass python setup.py install in the folder that contains the setup.py file, it shows me an error of:

running install /Users/faleevz/anaconda3/envs/py37/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. setuptools.SetuptoolsDeprecationWarning, /Users/faleevz/anaconda3/envs/py37/lib/python3.7/site-packages/setuptools/command/easy_install.py:159: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. EasyInstallDeprecationWarning, running bdist_egg running egg_info writing ARTDeco.egg-info/PKG-INFO writing dependency_links to ARTDeco.egg-info/dependency_links.txt writing entry points to ARTDeco.egg-info/entry_points.txt writing requirements to ARTDeco.egg-info/requires.txt writing top-level names to ARTDeco.egg-info/top_level.txt error: package directory 'ARTDeco' does not exist

I have also tried to manually make a directory before running the command. Each time it successfully downloads the ARTDeco.egg-info folder, but nothing else. Commands are not available.

I'd greatly appreciate your help! Many thanks

[faleevz]

Otherwise, if I manually add a folder, it does install several files (including build, dist), but the ARTDeco -h command does not run, saying that there is no ARTDeco module.

[sjroth]

Hi,

Have you tried the instructions as laid out in the README?

On Thu, Feb 22, 2024 at 11:52 PM faleevz @.***> wrote:

Otherwise, if I manually add a folder, it does install several files (including build, dist), but the ARTDeco -h command does not run, saying that there is no ARTDeco module.

— Reply to this email directly, view it on GitHub https://github.com/sjroth/ARTDeco/issues/21#issuecomment-1960729806, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACEVD722IHY46KCTJLGCLCLYVAN7RAVCNFSM6AAAAABDWAXZFWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRQG4ZDSOBQGY . You are receiving this because you are subscribed to this thread.Message ID: @.***>

[faleevz]

Hi, I have. Here is my code below:

conda env create -f environment.yml
Downloading and Extracting Packagess                                                                          
Preparing transaction: done                                                     
Verifying transaction: done                                                     
Executing transaction: done                                                                                                                                
# To activate this environment, use                                                                                                             
#     $ conda activate ARTDeco                                                  
#                                                                               
# To deactivate an active environment, use                                      
#                                                                               
#     $ conda deactivate                                                        

(py37) MA57747:Desktop faleevz$ conda activate ARTDeco                   
(ARTDeco) MA57747:Dekstop faleevamaria$ python setup.py install               
running install                                                                 
running bdist_egg                                                               
running egg_info                                                                
creating ARTDeco.egg-info                                                       
writing ARTDeco.egg-info/PKG-INFO                                               
writing dependency_links to ARTDeco.egg-info/dependency_links.txt               
writing entry points to ARTDeco.egg-info/entry_points.txt                       
writing requirements to ARTDeco.egg-info/requires.txt                           
writing top-level names to ARTDeco.egg-info/top_level.txt
writing manifest file 'ARTDeco.egg-info/SOURCES.txt'
error: package directory 'ARTDeco' does not exist' 

Your help would be greatly appreciated!

[faleevz]

Figured it out! For anyone who may be struggling- download the entire ARTDeco package from the github repository. Also the python setup.py install has been deprecated, using python -m pip install . worked for me.