Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
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Fix method to correctly address edge case of missing data. #119
Previously tried to address edge case where if a user provided a gene annotation that did NOT have sense or antisense strand information in their gene annotation (i.e the value of '.') the program would autoformat those to sense strand (i.e '+'). This is described more in the documentation.
I was addressing this edge case wrong and was making that entire row have the value of '+'. This commit fixes that and does what I originally intended to do.
Previously tried to address edge case where if a user provided a gene annotation that did NOT have sense or antisense strand information in their gene annotation (i.e the value of
'.') the program would autoformat those to sense strand (i.e'+'). This is described more in the documentation.I was addressing this edge case wrong and was making that entire row have the value of
'+'. This commit fixes that and does what I originally intended to do.