Closed teresi closed 1 year ago
update the chunk size on HDF5 to the default may reduce ram usage in some cases
WIP: waiting for the dependency PR to complete
$ make test ... 195 passed, 2 skipped, 50 warnings
(genes) [21:42 GOKU][f/chunk]:/media/teresi/data/genes/TE_Density [cmd]▸$ ./process_genome.py ..//TE_Density_Filtered_Gene_and_TE_Annotations/Cleaned_TAIR10_GFF3_genes_main_chromosomes.tsv ../TE_Density_Filtered_Gene_and_TE_Annotations/Cleaned_TAIR10_chr_main_chromosomes.fas.mod.EDTA.TEanno.tsv adiposetoperus -n 4 --output_dir ../TE_Density_Filtered_Gene_and_TE_Annotations/results ... subsets: 100%|██████████████████████████████████| 30/30 [04:09<00:00, 8.33s/it]^[ 2022-10-12 21:47:13 GOKU __main__[460871] INFO process density... complete
update the chunk size on HDF5 to the default may reduce ram usage in some cases
WIP: waiting for the dependency PR to complete
testing