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sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
GNU General Public License v3.0
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Add helper information so that user's can see what pseudomolecules and TE groups they have #129

Closed sjteresi closed 1 year ago

sjteresi commented 1 year ago

Just added some simple code to the import filtered TEs step. Outputs information to logger.info so that user's can see how many TE types they have and how many chromosomes they have. Should help with identifying if they have redundant groups, which seems to be a common user issue.

sjteresi commented 1 year ago

I also added code to the Makefile to simplify executing the system test with the toy Arabidopsis files. make system_test