sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
GNU General Public License v3.0
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F/refactor gene te data h5 #132

Closed sjteresi closed 1 year ago

sjteresi commented 1 year ago

Completely remove all usage of pandas.to_hdf from the code, as Michael asked. Replaced to_hdf with calls to pandas.to_csv.

This PR should be done after f/read_h5 because it was branched off of that branch. But I know we are still adding some things to f/read_h5....