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sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
GNU General Public License v3.0
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add stub for test_Overlap #18

Closed teresi closed 4 years ago

sjteresi commented 4 years ago

I have implemented the unit tests and the chromosome ID checks. Working on the to/from disk for GeneDatum. I am going to try and emulate the structure in overlap.py because I feel that my methods for writing hdf5 using Pandas are inadequate and they don't always load in to hdfview or hdfcompass nicely.

teresi commented 4 years ago

ok cool please do proceed to copy the overlap to/from disk like we talked about are you ready for this merge tho?