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sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
GNU General Public License v3.0
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Multipie graph creation #19

Closed sjteresi closed 4 years ago

sjteresi commented 4 years ago

Generated code to create pie graphs for general statistics and chromosome by chromosome statistics for H4 and Cam.

Had to modify the import files and the TE dictionary to add some different functionality.

I cleared up the merge conflicts

I added an optional command line argument that defaults to True to remove "contig" lines from the annotations. I don't believe you have the H4 strawberry annotation, but essentially I am removing incomplete "chromosomes" from the annotation.

teresi commented 4 years ago

as we discussed, thanks for doing the flake8 and we can talk about the plots some other time