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sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
GNU General Public License v3.0
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Scott merge overlap initial edits #21

Closed sjteresi closed 4 years ago

sjteresi commented 4 years ago
  1. Fixed all formats to be float32
  2. Added mandatory command-line argument for genome name
  3. Please take a look at MakeFile to see if I added the mandatory command-line argument correctly.
  4. Edited merge.py to have more descriptive ValueError statements.

Will do the tests for the data import and overloading in a separate branch later.

teresi commented 4 years ago

I'll look over this soon would you squash in the meantime?

sjteresi commented 4 years ago

I have squashed the commits. Feel free to take a look when you have the time.

teresi commented 4 years ago

@huckleberry-hound next time make sure to run the tests next time, I forgot to myself