Add relevant area calculation functions and tests

sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4

GNU General Public License v3.0

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Add relevant area calculation functions and tests #27

Closed sjteresi closed 4 years ago

sjteresi commented 4 years ago

Currently the class only has functions for calculating the relevant area (divisor for rho) values. This is akin to Overlap which only contains static methods.

Testing framework also complete, but could stand to use some simplification/polish when we have more time.

Let me know what is necessary to create the actual matrix, would this be similar to OverlapData?

sjteresi commented 4 years ago

5/06/2020 1:41 PM. @teresi I have pushed the changes we spoke about last night.

teresi commented 4 years ago

I'm squashing your branch and cleaning up the commit message

remember to do that next time so we have an easier time reading the history

teresi commented 4 years ago

@huckleberry-hound also rebasing ^