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sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
GNU General Public License v3.0
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Sense and Anti-Sense Density Values #63

Closed sjteresi closed 2 years ago

sjteresi commented 3 years ago

Post processing, flip density values for "left" and "right" based on if a gene is in antisense direction. Refer to the gene annotation for this information.

Then rename left/right outputs to "upstream/downstream".

sjteresi commented 3 years ago

In progress in data analysis repository

sjteresi commented 2 years ago

Accomplished in Density_Data class which is used to access the HDF5 files.