Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
I wrote the fix for the float32 issue. I made a custom strawberry script and placed it in a new folder import_scripts/ which will be used at a later date when we begin decoupling the cleaning of the annotation files from the main pipeline. And I also modified the code inside the current transposon/import_genes to be accurate in the meantime so I can rerun the pipeline.
I also wrote tests to verify that the float64 produces the right numbers.
I wrote the fix for the float32 issue. I made a custom strawberry script and placed it in a new folder
import_scripts/which will be used at a later date when we begin decoupling the cleaning of the annotation files from the main pipeline. And I also modified the code inside the currenttransposon/import_genesto be accurate in the meantime so I can rerun the pipeline.I also wrote tests to verify that the float64 produces the right numbers.