Add code to re-create Blueberry gene expression analysis example

sjteresi / TE_Density

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4

GNU General Public License v3.0

28 stars 4 forks source link

Add code to re-create Blueberry gene expression analysis example #91

Closed sjteresi closed 2 years ago

sjteresi commented 2 years ago

Add code for rudimentary expression v TE density graph in blueberry

Working single chromosome graphs, moving towards multichromosome graphs

Working loop for expression violin plots

Modify blueberry TE density scripts, and paths for clarity

Update import scripts to fix TE names and procedure for TE Density

Update TE renamer to make more clear

Refactor graphing of violin plots and create ore standardized method of iterating over data for graphing purposes