skDooley
commented
2 years ago Hi Remilyn,
That line is trying to write that file ('wb'). It looks like wherever your
notebook is running from doesn't have direct access to the pickles
directory. Use
import os
os.chdir(
or
%%bash mkdir pickles
If you have any other problems or questions, feel free to email me directly @.***
On Tue, Aug 16, 2022, 9:52 PM Remilyn Mendoza @.***> wrote:
Dear Dr. Dooley,
Good day. I am trying to run your scripts to find TracrRNA from my bacterial genomes. I have just started running the scripts, but I found an error that says: FileNotFoundError: [Errno 2] No such file or directory: 'pickles/allAssemblies.p'.
FileNotFoundError Traceback (most recent call last) in 20 theDate = date.today() 21 print("Ready to dump") ---> 22 dump(allAssemblies,open("pickles/allAssemblies.p","wb")) 23 print("Number of assemblies on %s: %i" % (theDate, len(allAssemblies)))
FileNotFoundError: [Errno 2] No such file or directory: 'pickles/allAssemblies.p'
I checked the pickles directory and true enough the only file there is the CasTree.p. May I know where can I get the allAssemblies.p? And if there's any, kindly let me know if I'm doing something wrong hence the error.
Thank you very much for your help.
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Dear Dr. Dooley,
Good day. I am trying to run your scripts to find TracrRNA from my bacterial genomes. I have just started running the scripts, but I found an error that says: FileNotFoundError: [Errno 2] No such file or directory: 'pickles/allAssemblies.p'.
FileNotFoundError Traceback (most recent call last)