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skDooley / TRACR_RNA

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bin/mapCommand.py missing #4

Open kushagrasharma opened 1 year ago

kushagrasharma commented 1 year ago

Hi Shane,

Thanks for putting your package up on Github - it's been quite easy getting it up and running. I've run into one issue with IdentifingTracrRNAs.ipynb at the end. That notebook calls StructureSearchScriptBuilder.py, which then in turn generates bash scripts at scripts/hpc/structSearches to be run (e.g. scripts/hpc/structSearches/Cluster_0.sb. Those scripts call another python file, mapCommand.py, which appears to have been located outside the Github repository, in ~/bin/mapCommand.py. Would it be possible for you to supply that file? Thanks so much!

skDooley commented 1 year ago

Sorry for the late reply. That file is already there, maybe you just aren't seeing it because it starts with a lowercase m? https://github.com/skDooley/TRACR_RNA/blob/master/scripts/mapCommand.py