Trouble installing pyrap through home-brew

Hi, I am trying to install pyrap using home brew. I am running on a MAC , Yosemite operating system. Below is the output I get after running 'brew install pyrap'

brew install pyrap ==> Installing pyrap from ska-sa/tap ==> Installing dependencies for ska-sa/tap/pyrap: casacore-data, homebrew ==> Installing ska-sa/tap/pyrap dependency: casacore-data ==> Downloading ftp://ftp.atnf.csiro.au/pub/software/measures_data/measures_data

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Warning: Cannot verify integrity of casacore-data-HEAD.tar.bz2 A checksum was not provided for this resource For your reference the SHA256 is: 3ede52c8bdea4cc4031d73f505ff5c3dfd186219e8fd77b5b4f2aabf309ee6fe ==> Caveats Installed latest ATNF measures_data tarball ==> Summary 🍺 /usr/local/Cellar/casacore-data/HEAD: 81 files, 13.9M, built in 1 minute 7 seconds ==> Installing ska-sa/tap/pyrap dependency: homebrew/python/numpy ==> Downloading https://homebrew.bintray.com/bottles-python/numpy-1.11.0.yosemit

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==> Pouring numpy-1.11.0.yosemite.bottle.tar.gz Error: The brew link step did not complete successfully The formula built, but is not symlinked into /usr/local Could not symlink bin/f2py Target /usr/local/bin/f2py already exists. You may want to remove it: rm '/usr/local/bin/f2py'

To force the link and overwrite all conflicting files: brew link --overwrite numpy

To list all files that would be deleted: brew link --overwrite --dry-run numpy

Possible conflicting files are: /usr/local/bin/f2py /usr/local/lib/python2.7/site-packages/numpy/config.py /usr/local/lib/python2.7/site-packages/numpy/init.py /usr/local/lib/python2.7/site-packages/numpy/_import_tools.py /usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py /usr/local/lib/python2.7/site-packages/numpy/compat/init.py /usr/local/lib/python2.7/site-packages/numpy/compat/_inspect.py /usr/local/lib/python2.7/site-packages/numpy/compat/py3k.py /usr/local/lib/python2.7/site-packages/numpy/compat/setup.py /usr/local/lib/python2.7/site-packages/numpy/core/init.py /usr/local/lib/python2.7/site-packages/numpy/core/_dummy.so /usr/local/lib/python2.7/site-packages/numpy/core/_internal.py /usr/local/lib/python2.7/site-packages/numpy/core/_methods.py /usr/local/lib/python2.7/site-packages/numpy/core/arrayprint.py /usr/local/lib/python2.7/site-packages/numpy/core/cversions.py /usr/local/lib/python2.7/site-packages/numpy/core/defchararray.py 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/usr/local/lib/python2.7/site-packages/numpy/lib/tests/data/py3-objarr.npz /usr/local/lib/python2.7/site-packages/numpy/lib/tests/data/python3.npy /usr/local/lib/python2.7/site-packages/numpy/lib/tests/data/win64python2.npy /usr/local/lib/python2.7/site-packages/numpy/lib/tests/testdatasource.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/testiotools.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/testversion.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_arraypad.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_arraysetops.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_arrayterator.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_financial.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_format.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_function_base.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_index_tricks.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_io.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_nanfunctions.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_packbits.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_polynomial.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_recfunctions.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_regression.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_shape_base.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_stride_tricks.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_twodim_base.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_type_check.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_ufunclike.py /usr/local/lib/python2.7/site-packages/numpy/lib/tests/test_utils.py /usr/local/lib/python2.7/site-packages/numpy/lib/twodim_base.py /usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py /usr/local/lib/python2.7/site-packages/numpy/lib/ufunclike.py /usr/local/lib/python2.7/site-packages/numpy/lib/user_array.py /usr/local/lib/python2.7/site-packages/numpy/lib/utils.py /usr/local/lib/python2.7/site-packages/numpy/linalg/init__.py /usr/local/lib/python2.7/site-packages/numpy/linalg/_umath_linalg.so /usr/local/lib/python2.7/site-packages/numpy/linalg/info.py /usr/local/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so /usr/local/lib/python2.7/site-packages/numpy/linalg/linalg.py /usr/local/lib/python2.7/site-packages/numpy/linalg/setup.py /usr/local/lib/python2.7/site-packages/numpy/linalg/tests/test_build.py /usr/local/lib/python2.7/site-packages/numpy/linalg/tests/test_deprecations.py /usr/local/lib/python2.7/site-packages/numpy/linalg/tests/test_linalg.py /usr/local/lib/python2.7/site-packages/numpy/linalg/tests/test_regression.py /usr/local/lib/python2.7/site-packages/numpy/ma/init.py /usr/local/lib/python2.7/site-packages/numpy/ma/bench.py /usr/local/lib/python2.7/site-packages/numpy/ma/core.py /usr/local/lib/python2.7/site-packages/numpy/ma/extras.py /usr/local/lib/python2.7/site-packages/numpy/ma/mrecords.py /usr/local/lib/python2.7/site-packages/numpy/ma/setup.py /usr/local/lib/python2.7/site-packages/numpy/ma/tests/test_core.py /usr/local/lib/python2.7/site-packages/numpy/ma/tests/test_extras.py /usr/local/lib/python2.7/site-packages/numpy/ma/tests/test_mrecords.py /usr/local/lib/python2.7/site-packages/numpy/ma/tests/test_old_ma.py /usr/local/lib/python2.7/site-packages/numpy/ma/tests/test_regression.py /usr/local/lib/python2.7/site-packages/numpy/ma/tests/test_subclassing.py /usr/local/lib/python2.7/site-packages/numpy/ma/testutils.py /usr/local/lib/python2.7/site-packages/numpy/ma/timer_comparison.py /usr/local/lib/python2.7/site-packages/numpy/ma/version.py /usr/local/lib/python2.7/site-packages/numpy/matlib.py /usr/local/lib/python2.7/site-packages/numpy/matrixlib/init.py /usr/local/lib/python2.7/site-packages/numpy/matrixlib/defmatrix.py /usr/local/lib/python2.7/site-packages/numpy/matrixlib/setup.py /usr/local/lib/python2.7/site-packages/numpy/matrixlib/tests/test_defmatrix.py /usr/local/lib/python2.7/site-packages/numpy/matrixlib/tests/test_multiarray.py /usr/local/lib/python2.7/site-packages/numpy/matrixlib/tests/test_numeric.py /usr/local/lib/python2.7/site-packages/numpy/matrixlib/tests/test_regression.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/init.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/_polybase.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/chebyshev.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/hermite.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/hermite_e.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/laguerre.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/legendre.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/polynomial.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/polyutils.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/setup.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_chebyshev.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_classes.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_hermite.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_hermite_e.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_laguerre.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_legendre.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_polynomial.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_polyutils.py /usr/local/lib/python2.7/site-packages/numpy/polynomial/tests/test_printing.py /usr/local/lib/python2.7/site-packages/numpy/random/init__.py /usr/local/lib/python2.7/site-packages/numpy/random/info.py /usr/local/lib/python2.7/site-packages/numpy/random/mtrand.so /usr/local/lib/python2.7/site-packages/numpy/random/randomkit.h /usr/local/lib/python2.7/site-packages/numpy/random/setup.py /usr/local/lib/python2.7/site-packages/numpy/random/tests/test_random.py /usr/local/lib/python2.7/site-packages/numpy/random/tests/test_regression.py /usr/local/lib/python2.7/site-packages/numpy/setup.py /usr/local/lib/python2.7/site-packages/numpy/testing/init.py /usr/local/lib/python2.7/site-packages/numpy/testing/decorators.py /usr/local/lib/python2.7/site-packages/numpy/testing/noseclasses.py /usr/local/lib/python2.7/site-packages/numpy/testing/nosetester.py /usr/local/lib/python2.7/site-packages/numpy/testing/print_coercion_tables.py /usr/local/lib/python2.7/site-packages/numpy/testing/setup.py /usr/local/lib/python2.7/site-packages/numpy/testing/tests/test_decorators.py /usr/local/lib/python2.7/site-packages/numpy/testing/tests/test_doctesting.py /usr/local/lib/python2.7/site-packages/numpy/testing/tests/test_utils.py /usr/local/lib/python2.7/site-packages/numpy/testing/utils.py /usr/local/lib/python2.7/site-packages/numpy/tests/test_ctypeslib.py /usr/local/lib/python2.7/site-packages/numpy/tests/test_matlib.py /usr/local/lib/python2.7/site-packages/numpy/tests/test_numpy_version.py /usr/local/lib/python2.7/site-packages/numpy/tests/test_scripts.py /usr/local/lib/python2.7/site-packages/numpy/version.py ==> Summary 🍺 /usr/local/Cellar/numpy/1.11.0: 430 files, 9M ==> Installing ska-sa/tap/pyrap dependency: casacore ==> Using Homebrew-provided fortran compiler. This may be changed by setting the FC environment variable. ==> Downloading https://github.com/casacore/casacore/archive/v2.1.0.tar.gz ==> Downloading from https://codeload.github.com/casacore/casacore/tar.gz/v2.1.0

100.0%

==> cmake ../.. -DCMAKE_C_FLAGS_RELEASE=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE=-DNDE ==> make install Warning: ska-sa/tap/casacore dependency gcc was built with a different C++ standard library (libstdc++ from clang). This may cause problems at runtime. 🍺 /usr/local/Cellar/casacore/2.1.0: 1,429 files, 50.2M, built in 17 minutes 50 seconds ==> Installing ska-sa/tap/pyrap ==> Using Homebrew-provided fortran compiler. This may be changed by setting the FC environment variable. ==> Downloading http://pyrap.googlecode.com/files/pyrap-1.1.0.tar.bz2

100.0%

==> Patching ==> Applying patch1.diff patching file batchbuild.py patching file libpyrap/tags/pyrap-0.3.2/scons-tools/utils.py ==> Applying patch3.diff patching file pyrap_fitting/tags/pyrap_fitting-0.2.1/setupext.py Hunk #1 succeeded at 121 with fuzz 1. patching file pyrap_functionals/tags/pyrap_functionals-0.2.1/setupext.py patching file pyrap_images/tags/pyrap_images-0.1.1/setupext.py patching file pyrap_measures/tags/pyrap_measures-0.2.1/setupext.py ==> Applying patch5.diff patching file libpyrap/tags/pyrap-0.3.2/SConstruct ==> Applying patch10.diff patching file libpyrap/tags/pyrap-0.3.2/pyrap/Converters/PycArrayComCC.h ==> Applying patch11.diff patching file batchbuild.py ==> Applying patch12.diff patching file pyrap_images/tags/pyrap_images-0.1.1/setup.py ==> python batchbuild.py --boost-root=/usr/local --boost-lib=boostpython-mt --e Last 15 lines from /Users/Siyambonga/Library/Logs/Homebrew/pyrap/01.python: boost::python::api::object casa::pyrap::numpy::makePyArrayObject(casa::Array const&) in PycArrayNP.os "casa::Array::freeStorage(int const&, bool) const", referenced from: boost::python::api::object casa::pyrap::numpy::makePyArrayObject(casa::Array const&) in PycArrayNP.os "casa::Array::freeStorage(unsigned int const&, bool) const", referenced from: boost::python::api::object casa::pyrap::numpy::makePyArrayObject(casa::Array const&) in PycArrayNP.os "casa::Array::freeStorage(short const&, bool) const", referenced from: boost::python::api::object casa::pyrap::numpy::makePyArrayObject(casa::Array const&) in PycArrayNP.os "casa::Array::freeStorage(unsigned short const_&, bool) const", referenced from: boost::python::api::object casa::pyrap::numpy::makePyArrayObject(casa::Array const&) in PycArrayNP.os ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) scons: ** [build_darwin_x86_64/opt/libpyrap.dylib] Error 1 scons: building terminated because of errors. * Entering /private/tmp/pyrap20160414-14414-djfj76/pyrap-1.1.0/libpyrap/tags/pyrap-0.3.2 EXECUTING: scons --boost-root=/usr/local --boost-lib=boost_python-mt --prefix=/usr/local/Cellar/pyrap/1.1.0 --enable-hdf5 --universal=x86_64 --extra-cxxflags='-std=c++11' install

READ THIS: https://git.io/brew-troubleshooting If reporting this issue please do so at (not Homebrew/brew):

https://github.com/ska-sa/homebrew-tap/issues

When running 'brew info pyrap' I get

ska-sa/tap/pyrap: stable 1.1.0, HEAD http://code.google.com/p/pyrap/ Not installed From: https://github.com/ska-sa/homebrew-tap/blob/master/pyrap.rb ==> Dependencies Build: scons ✔ Required: boost-python ✔, casacore ✔ Siyambongas-MacBook-Pro:~ Siyambonga$

Please assist me.

Regards Siya

ska-sa / homebrew-tap