Closed emmanuel-contreras closed 1 year ago
add validation to the regionprops a2 + a1 == 100 roi? do bounding box match on each roi?
--------- possible approach for OMI regionprops call regionprops for each image (a1,a2,t1,t2, redox ratio, tm)
return dictionary of 13 parameters mean and stdev
1. nadh_intensity
2. nadh_a1
3. nadh_a2
4. nadh_t1
5. nadh_t2
6. nadh_tau_mean
7. fad_intensity
8. fad_a1
9. fad_a2
10. fad_t1
11. fad_t2
12. fad_tau_mean
13. redox_ratio
Creating a function for OMI regionprops would be really useful especially if we can pass in our dictionaries and have it return a dictionary of all the OMI parameters per ROI
Masked array for this implementation would be appropriate to only select those pixels within the mask and not bg