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skandlab / SMuRF

MIT License
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Support for tumor-only analysis #58

Open GACGAMA opened 1 year ago

GACGAMA commented 1 year ago

Hi! I would like to know if it is possible to use Smurf with tumor-only mode. I know VarScan and Strelka2 can`t work with tumor-only, so I would have only the VCFs for freebayes, GATK and VarDict. Is there any possibility of adapting smurf to use only a specific set of programs?

EvaPang2022 commented 7 months ago

Hi,

Sorry for the late reply. But the latest version of SMuRF was trained and tested on the output of exactly the 5 callers.

Regards, Eva